Fig. 5
From: Characterising genome architectures using genome decomposition analysis
Repeat-rich bands and gene-poor subtelomeres of Eimeria tenella are captured more or less well by different feature sets. A A number of features are shown in 5kbp windows across chromosome 6 of E. tenella. The repeat-rich bands, defined here by GCT (CAG) repeats are highlighted in yellow. The gene-poor subtelomeres are highlighted in blue and a sag multigene family array in pink. Data range indicates minimum and maximum values for the y axis of each feature. B Four different architectures, based on different feature sets are shown below. The seq, seq + rep and seq + rep + genes feature sets capture the repeat-rich regions very well, with the last of these also capturing the gene-poor subtelomeres. The seq + rep + gene + orth feature set does not capture the repeat-rich regions in a single cluster but instead focuses more on whether a window contains more well-conserved genes or not. It retains the cluster identifying the gene-poor subtelomeres and highlights arrays of sag genes