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Fig. 3 | BMC Genomics

Fig. 3

From: MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores

Fig. 3

The effects of the size of the all-vs-all block on cluster quality, percentage of true centers, time, and memory. Figures a–d are produced by evaluating MeShClust v3.0 using different block sizes (1k, 2k, 5k, 10k, 15k, 20k, and 25k) on three small data sets: Short 60, Medium 70, and Long 80; each of these sets consists of less than 25k sequences and includes 100 clusters. Figures e–h are produced by evaluating MeShClust v3.0 using different block sizes (1k, 2k, 5k, 10k, 15k, 20k, 25k, and 46k) on one large data set (the Numerous 97 set), which includes more than one million sequences and 5,000 clusters

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BMC Genomics

ISSN: 1471-2164

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