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Table 2 Examples of enriched gene ontologies and associated genes involved in neural plasticity and activity that were up-regulated (p ≤ 0.01) by ocean acidification in the olfactory rosette of F2 European Sea Bass (Dicentrarchus labrax) juveniles

From: The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance

GO term

Subcategory

Number of transcripts

Examples of regulated genes

Neuron projection

Axon guidance

15

apbb1, cdk5, epha5, epha8, ephb2, kif5c, gap43, sptbn4, tgfb2

 

Axon extension

3

cdk5, map1b, sema3a

Intracellular signalling transduction neuroplasticity

Neurotrophin TRK receptor sig. pathway

19

adcy6, arhgef7, calm1, erbb4, gab1, kras, ngef, shc1, vav2

 

Glutamate signalling pathway

13

gnaq, glur2b, gria1a, gria3b, gria4k, grik2, grik5, grin3a, grind2d

 

Ephrin signalling pathway

9

chn1, efna5, ek1, epha5, epha7, epha8, ephb1, ephb2, etk2

 

Regulation of synaptic plasticity

22

camk2b, cplx2, grik2, kcnn2, nf1, nptn, shank3, syngr1

Regulation of action potential

 

21

ank2, ank3, cacna1d, kcnip1, kcnc2, ryr2, scn1a, scn2b

Reg. of the neurotransmitter levels

 

34

cacna1a, gabra2, napb, nf1, rims1, slc6a13, snap25, stx1a, trpm7

  1. Several transcripts may originate from the same gene. This list is given an example, with no attempt to be exhaustive. See Additional files 5,6,7,8,9, and 10 for an enlarged version that include gene description and associated GO terms. GO Gene Ontology