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Fig. 4 | BMC Genomics

Fig. 4

From: CircVIS: a platform for circRNA visual presentation

Fig. 4

CircRNA isoform presentation. A The table shows details of the given circRNA including the origin of circRNA, Ref transcript, the pair of exon M/N for backsplice taking place from the representative transcript. The column of subcellular info shows ‘green’ if a given circRNA is identified in corresponding different subcellular compartments. Similarly, if ORF is predicted, the column of ‘cORF’ (circORF) shows green. The last two columns indicate in which database (DB) the given circRNA was archived (cBase: circBase; cRNADb: circRNADb). B Results of circRNA isoform presentation. The representative transcripts are showed in red tracks. A subset of circRNAs are aligned to the upper track (ENST00000647444) while others fit to ENST00000602725 or ENST00000532001. Green track: CircRNAs predicted to have ORF; Blue track: circRNA predicted not to have ORF. C CircRNAs with ORFs aligned to its protein with annotated domains. ORFs from different transcripts are color-coded. Paired exons of backsplicing exons are labeled at the end of gene symbol

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