Table 1 Descriptive statistics of sequence quality and mapping rate from Hu sheep and Tibetan sheep
From: Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails
Breed | Raw reads (Million) | Trimmed reads | HISAT2 total mapped reads (%) | Bowtie2 total mapped reads (%) | HISAT2 uniquely mapped reads (%) | Bowtie2 uniquely mapped reads (%) |
|---|---|---|---|---|---|---|
Z1 | 43.82 | 43.12 | 36.93(85.64) | 27.32(63.36) | 24.20(56.13) | 22.07(51.18) |
Z2 | 43.82 | 43.22 | 37.15(85.97) | 27.63(63.93) | 23.84(55.16) | 22.25(51.48) |
Z3 | 43.82 | 43.02 | 37.02(86.06) | 27.70(64.38) | 23.70(55.10) | 22.01(51.16) |
H1 | 43.82 | 43.12 | 37.27(86.43) | 27.63(64.07) | 23.13(53.63) | 21.31(49.41) |
H2 | 45.57 | 44.65 | 38.31(85.80) | 30.16(67.55) | 19.85(44.46) | 21.37(47.85) |
H3 | 45.57 | 44.68 | 38.55(86.29) | 30.90(69.16) | 19.80(44.31) | 21.06(47.13) |