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Fig. 2 | BMC Genomics

Fig. 2

From: Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)

Fig. 2

Maximum-likelihood pan-genome phylogeny of 69 strains belonging to the genus Allorhizobium and other Rhizobiaceae members (collapsed branches). The tree was estimated with IQ-TREE from the consensus (COGtriangles and OMCL clusters) gene presence/absence matrix containing 33,396 clusters obtained using GET_HOMOLOGUES software. The numbers on the nodes indicate the approximate Bayesian posterior probabilities support values (first value) and ultra-fast bootstrap values (second value), as implemented in IQ-TREE. The tree was rooted using the Mesorhizobium spp. sequences as the outgroup. The scale bar represents the number of expected substitutions per site under the best-fitting GTR2 + FO + R5 model. The same tree, but without collapsed clades, is presented in the Figure S3

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BMC Genomics

ISSN: 1471-2164

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