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Table 2 Top significant DEGs from the comparison between 12-week tick-exposed and tick-naive steers

From: Transcriptional changes in the peripheral blood leukocytes from Brangus cattle before and after tick challenge with Rhipicephalus australis

Symbol

Entrez ID

Name

Log2FCa

p-val

FDRb

SMPD3

514,201

sphingomyelin phosphodiesterase 3

4.26

3.83E-04

9.50E-03

ALOX15

282,139

arachidonate 15-lipoxygenase

3.71

4.04E-03

3.59E-02

GATA1

516,066

GATA binding protein 1

3.19

1.16E-04

5.38E-03

CCR3

408,018

C-C motif chemokine receptor 3

3.17

1.91E-04

6.90E-03

LOC100297044

100,297,044

C-C motif chemokine 14

3.13

3.53E-03

3.32E-02

GPAT2

526,739

glycerol-3-phosphate acyltransferase 2, mitochondrial

3.11

1.03E-06

6.95E-04

LOC100848006

100,848,006

uncharacterized LOC100848006

3.02

1.56E-03

2.12E-02

HRH4

783,354

histamine receptor H4

2.98

1.34E-03

1.93E-02

LOC104969122

104,969,122

uncharacterized LOC104969122

2.90

6.90E-05

4.32E-03

ALOX5

404,074

arachidonate 5-lipoxygenase

2.72

3.31E-03

3.21E-02

PDLIM1

614,675

PDZ and LIM domain 1

2.64

4.80E-05

3.64E-03

HBB

280,813

hemoglobin, beta

2.53

1.82E-05

2.60E-03

BMPR1B

407,128

bone morphogenetic protein receptor type 1B

2.50

2.66E-05

2.87E-03

MUC13

100,295,610

mucin 13, cell surface associated

2.49

1.09E-06

6.95E-04

FOS

280,795

Fos proto-oncogene, AP-1 transcription factor subunit

−2.70

5.90E-07

5.46E-04

GRO1

281,212

chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)

−3.43

7.30E-06

1.71E-03

  1. a log2FC represents the fold change in gene expression between 12-week tick-exposed (T12 sample set) and tick-naïve steers (T0 sample set). Table displays genes above threshold |logFC| > 2.5
  2. b FDR represents the false discovery rate (Benjamini-Hochberg multiple test correction of the p-value). Table displays genes below threshold FDR < 0.05