Table 14 Comparison of ACC of different PPIs prediction methods on independent test sets
From: SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction
Methods/Species | C.elegans | E.coli | H.sapiens | M.musculus |
|---|---|---|---|---|
test pairs | 4013 | 6984 | 1412 | 313 |
DeepPPI[34] | 94.84 | 92.19 | 93.77 | 91.37 |
DeepFE-PPI[39] | 100 | 100 | 100 | 100 |
LightGBM-PPI[27] | 90.16 | 92.16 | 94.83 | 94.57 |
StackPPI[50] | 97.11 | 98.71 | 97.66 | 98.40 |
GcForest-PPI[41] | 96.01 | 96.3 | 98.58 | 99.04 |
GTB-PPI[28] | 92.42 | 94.06 | 97.38 | 98.08 |
AE-LGBM[60] | 90.10 | 92.10 | 94.80 | 94.50 |
SDNN-PPI | 100 | 100 | 100 | 100 |