Fig. 6

Distinct genotypes among the tissues of TC7 plants. Four types of tissues from three soil-grown PC and TC7 individuals were genotyped at two sites in TC7 SNV-rich region I on chromosome 5 using Sanger sequencing from genomic DNA. For each plant, three leaves, one stem, one rhizome, and three root samples were genotyped. The minor allele ratio (mAR) was calculated as the ratio of the height of the minor allele peak to the total height of the major and minor allele peaks at the site in the Sanger sequencing chromatogram. Based on the mAR, the genotypes were classified into three categories: type I (mAR < 0.05), type II (0.05 ≤ mAR < 0.20), and type III (0.2 ≤ mAR < 0.45)