species | P. cf. gigantea | G. niphandrodes | C. parvum | T. gondii | P. falciparum | C. velia | V. brassicaformis | |
---|---|---|---|---|---|---|---|---|
strain | A | B | na | IowaII | ME49 | 3D7 | CCMP2878 | CCMP3155 |
nb of contigs/chromosomes | 787 | 934 | 355 | 8 | 435 | 14 | 5470 | 1006 |
total length of assembly (bp) | 8,806,768 | 9,049,943 | 13,873,624 | 9,102,324 | 63,472,444 | 23,292,622 | 192,006,978 | 72,475,329 |
mean length contigs/chromosomes (bp) | 11,190.3 | 9689.45 | 39,080.63 | 1,137,790.5 | 145,913.66 | 1,663,758.71 | 35,101.82 | 72,043.07 |
GC content (%) | 54.3 | 54.3 | 53.8 | 30.2 | 52.4 | 19.3 | 49.1 | 58.1 |
nb of protein coding genes | 5270 | 5361 | 6606 | 4020 | 8862 | 5602 | 30,604 | 23,412 |
mean length of coding genes (bp) | 1438.2 | 1450.3 | 1392.6 | 1865.0 | 5602.9 | 2488.6 | 4507.6 | 2704.7 |
nb of tRNA | 14 | 14 | 231 | 45 | 150 | 45 | 0 | 0 |
nb of rRNA | 27 | 25 | 0 | 5 | 420 | 28 | 0 | 0 |
nb of gene with intron(s) | 2957 | 2981 | 2390 | 575 | 6801 | 3010 | 21,895 | 22,163 |
median length of the introns (bp) | 28 [27–30] | 28 [27–30] | 95 [56–145] | 65 [51–91] | 467 [322–632] | 140 [110–184] | 372 [273–520] | 81 [70–98] |
mode of intron length (bp) | 28 | 28 | 37 | 44 | 55 | 121 | 320 | 74 |
mean nb of introns per gene* | 1.8 | 1.8 | 1.4 | 1.8 | 5.9 | 2.9 | 5.4 | 7.9 |
non-coding DNA (%) | 16 | 16 | 37 | 24 | 68 | 47 | 74 | 50 |