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Fig. 2 | BMC Genomics

Fig. 2

From: In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

Fig. 2

Phylogenetic relationship of LLPs in Arabidopsis thaliana (AtLLPs) and their orthologs present in Marchantia polymorpha, Physcomitrella patens, Selaginella moellendorffii, Amborella trichopoda, Arabidopsis lyrata, Brassica oleracea, Brassica rapa, Daucus carota, Solanum lycopersicum, Solanum tuberosum, Oryza sativa ssp. japonica, Zea mays, Triticum aestivum, and Populus trichocarpa. To construct the phylogenetic tree, the peptide sequences of AtLLPs and their orthologs were retrieved from NCBI and Phytozome. Peptide sequences were aligned using ClustalW program in MEGA 11. The neighbour-joining tree was constructed using MEGA 11 where bootstrap method used as a test of phylogeny. Note that 1000 bootstrap replicates were used in the test and bootstrap-values are presented as percentage (%) below each branch point. Orthologs from each species are color coded as represented by colored boxes below the tree. Group I is represented by bryophytes and pteridophytes, Group II by members of Brassicaceae, Group III by dicots, and Group IV by monocots

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BMC Genomics

ISSN: 1471-2164

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