Table 3 Prediction of antimicrobial resistance gene and integrative conjugative element (ICE) in S. parasuis genomes.

SUT-380

/

erm(B), ant(6)-Ia, tet(L), tet(O)

/

SUT-503

/

/

/

SUT-286

3

ICESpsSUT-286-1

910,877–1,034,765

123,889

38.81

tet(M), ant(6)-Ia

Y

ICESpsSUT-286-2

1,759,153–1,810,570

51,418

39.39

ICESpsSUT-286-3

1,842,722–1,907,421

64,700

37.77

SUT-7

/

erm(B), aph(3′)-III, ant(6)-Ia, mef(A)

/

BS27

/

msr(D), mef(A)

/

BS26

/

msr(D), mef(A)

/

H35

2

ICESpsH35–1

1,607,033–1,676,868

69,836

36.52

msr(D), erm(B), ant(6)-Ia, aac(6′)-aph(2″), lsa(E), mdt(A), tet(M), optrA, mef(A), catQ, lnu(B), Cfr(D)

Y

ICESpsH35–2

2,018,960–2,081,277

62,318

38.99

4253

/

/

/

86–5192

/

erm(B), tet(O), ant(6)-Ia

/

88–1861

1

ICESps88–1861

ALLW01000055.1 (126,339 - end), ALLW01000056.1, ALLW01000057.1, ALLW01000058.1, ALLW01000059.1,ALLW01000060.1, ALLW01000061.1 (start - 53,947)

106,501

40.22

erm(B), tet(O), ant(6)-Ia

N

89–4109-1

2

ICESps89–4109-1-1

ALLL01000008.1 (18,381 - end), ALLL01000009.1, ALLL01000010.1, ALLL01000011.1, ALLL01000012.1, ALLL01000013.1 (start - 14,394)

161,688

40.74

erm(B), tet(O), ant(6)-Ia, lnu(C)

Y

ICESps89–4109-1-2

ALLL01000049.1 (459 - end), ALLL01000050.1, ALLL01000051.1, ALLL01000052.1, ALLL01000053.1 (start - 7605)

77,346

38.45

SUT-319

2

ICESpsSUT-319-1

contig001 (134186–247,211)

113,026

38.95

erm(B), ant(6)-Ia, tet(L), tet(O)

Y

ICESpsSUT-319-2

contig004 (120,272 - end), contig005 (start - 97,118)

135,071

40.22

SUT-328

1

ICESpsSUT-328-1

contig003 (61,960 - end), contig004 (start - 20,840)

119,180

39.74

erm(B), ant(6)-Ia, tet(L), tet(O)

Y

10–36,905

/

tet(M)

/