Table 1 Strain-specific genes of CI133 and CI172 strains
Typea | Gene name | Begin | End | Frame | Product |
|---|---|---|---|---|---|
CI133 strain | |||||
CDS | _ | 2,465,413 | 2,465,574 | 1 | conserved protein of unknown function |
CDS | _ | 3,383,063 | 3,383,389 | -3 | Coat protein (fragment) |
fCDS | yjcF | 3,455,090 | 3,455,269 | -3 | fragment of conserved hypothetical protein (part 2) |
CDS | _ | 3,529,696 | 3,529,758 | 1 | protein of unknown function |
fCDS | yidX | 872,107 | 872,283 | 1 | fragment of putative lipoprotein C (part 2) |
CDS | _ | 4,151,583 | 4,151,867 | 3 | conserved protein of unknown function |
CDS | _ | 4,157,162 | 4,157,227 | 2 | protein of unknown function |
CDS | _ | 1,847,378 | 1,847,581 | 2 | protein of unknown function |
CDS | _ | 305,872 | 305,958 | -1 | conserved protein of unknown function |
fCDS | ycgV | 312,055 | 312,423 | 1 | fragment of putative adhesin; putative autotransporter (part 1) |
fCDS | rcsD | 2,721,543 | 2,722,163 | -1 | fragment of phosphotransfer intermediate protein in two-component regulatory system RcsCDB (part 1) |
CI172 strain | |||||
CDS | _ | 382,222 | 382,428 | -3 | Conserved protein of unknown function |
CDS | _ | 384,019 | 386,238 | 1 | Conjugal transfer protein |
CDS | ceaB | 386,471 | 388,216 | 2 | Colicin-E2 |
CDS | ceiB | 388,219 | 388,479 | 1 | Colicin-E2 immunity protein |
CDS | celB | 388,541 | 388,684 | 2 | Lysis protein for colicins E2 and E3 |
CDS | _ | 388,954 | 389,022 | 1 | Protein of unknown function |
fCDS | mtlA | 2,929,888 | 2,930,892 | -3 | Fragment of fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components (part 1) |
CDS | _ | 3,064,292 | 3,064,357 | 2 | Protein of unknown function |
CDS | _ | 3,239,766 | 3,239,861 | -1 | Conserved protein of unknown function |
CDS | _ | 496,366 | 496,518 | 1 | Protein of unknown function |
CDS | _ | 556,204 | 556,617 | -3 | Protein of unknown function |
fCDS | ygbI | 3,578,405 | 3,578,527 | -2 | Fragment of putative DNA-binding transcriptional regulator (part 1) |
CDS | _ | 3,671,334 | 3,671,399 | 3 | Conserved protein of unknown function |
CDS | _ | 3,883,260 | 3,883,328 | 3 | Conserved protein of unknown function |
fCDS | yjjI | 946,318 | 946,470 | 1 | Fragment of conserved hypothetical protein (part 2) |
CDS | _ | 1,052,082 | 1,052,255 | -1 | Protein of unknown function |
CDS | _ | 1,535,495 | 1,536,028 | -2 | Conserved protein of unknown function |
fCDS | pdxK | 2,235,680 | 2,235,982 | 2 | Fragment of pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase (part 1) |