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Table 1 Number of variants per chromosome

From: Structural variants and tandem repeats in the founder individuals of four F2 pig crosses and implications to F2 GWAS results

SSC

SNPs

Small indels

Structural variants

Tandem repeats

Polymorphic tandem repeats

1

2,100,792

492,397

1,268

104,628

10,893

2

1,447,573

343,180

908

56,192

6,574

3

1,386,966

291,597

716

49,565

5,897

4

1,342,424

290,615

765

49,228

5,929

5

1,157,084

267,350

714

37,884

4,988

6

1,631,542

370,136

896

64,079

7,295

7

1,255,167

284,413

769

44,794

5,424

8

1,422,204

338,937

798

52,268

6,549

9

1,423,977

328,226

926

50,282

6,340

10

1,002,412

222,468

537

23,164

5,613

11

955,612

214,708

603

28,679

4,183

12

771,362

170,298

462

21,773

3,062

13

1,617,902

410,438

956

81,922

8,385

14

1,374,393

321,456

812

51,769

6,160

15

1,210,587

298,692

757

55,135

5,892

16

912,732

210,198

571

29,850

4,852

17

788,319

174,886

484

22,770

3,139

18

603,633

123,587

259

20,574

2,555

Total

22,404,681

5,153,582

13,201

844,556

103,730