Table 1 The cp genome characteristics of 17 Viola species
Species | Raw reads (pair) | Genome Size (bp) | LSC region (bp) | IR region (bp) | SSC region (bp) | GC content (%) | Number of Genes | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Over all | LSC | IR | SSC | Total | CDS | tRNAs | rRNAs | ||||||
Viola acuminata | 9,709,090 | 158940 | 87250 | 27159 | 17372 | 36.1 | 33.6 | 42.1 | 29.8 | 110 | 76 | 30 | 4 |
V. chaerophylloides | 8,709,947 | 157113 | 85577 | 27154 | 17228 | 36.3 | 34.0 | 42.2 | 29.9 | 110 | 76 | 30 | 4 |
V. collina | 7,447,895 | 157890 | 86495 | 27102 | 17191 | 36.3 | 33.8 | 42.2 | 30.1 | 110 | 76 | 30 | 4 |
V. dissecta | 7,178,430 | 157113 | 85557 | 27154 | 17228 | 36.3 | 34.0 | 42.2 | 29.9 | 110 | 76 | 30 | 4 |
V. inconspicua | 6,817,359 | 156624 | 85822 | 27122 | 16558 | 36.3 | 33.8 | 42.1 | 30.1 | 110 | 76 | 30 | 4 |
V. mirabilis | - | 158162 | 86565 | 27123 | 17351 | 36.2 | 33.8 | 42.2 | 29.9 | 110 | 76 | 30 | 4 |
V. monbeigii | 7,091,420 | 156580 | 85726 | 26423 | 18008 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. mongolica 1 | 9,917,465 | 156870 | 85364 | 27184 | 17138 | 36.4 | 34.0 | 42.1 | 30.0 | 110 | 76 | 30 | 4 |
V. mongolica 2 | 7,985,972 | 156904 | 85373 | 27192 | 17147 | 36.4 | 34.0 | 42.1 | 30.0 | 110 | 76 | 30 | 4 |
V. patrinii | 8,016,998 | 156508 | 85694 | 27404 | 18006 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. phalacrocarpa | 1,630,516 | 156483 | 85669 | 27404 | 18006 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. philippica 1 | 8,268,704 | 156599 | 85751 | 26422 | 18004 | 36.2 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. philippica 2 | 5,611,822 | 157298 | 85756 | 27195 | 17146 | 36.2 | 33.8 | 42.1 | 29.9 | 110 | 76 | 30 | 4 |
V. prionantha | 8,175,231 | 156509 | 85693 | 26404 | 18008 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. raddeana | - | 157597 | 86460 | 26924 | 17289 | 36.2 | 33.8 | 42.3 | 29.9 | 110 | 76 | 30 | 4 |
V. variegata | 7,200,026 | 156582 | 85769 | 26411 | 17991 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. websteri | - | 158111 | 86588 | 27166 | 17191 | 36.2 | 33.7 | 42.1 | 29.9 | 110 | 76 | 30 | 4 |
V. yezoensis | 4,636,893 | 156537 | 85706 | 26417 | 17997 | 36.3 | 33.8 | 42.6 | 29.6 | 110 | 76 | 30 | 4 |
V. yunnanfuensis 1 | 6,179,277 | 156974 | 85975 | 27160 | 16679 | 36.3 | 33.8 | 42.1 | 30.2 | 110 | 76 | 30 | 4 |
V. yunnanfuensis 2 | 4,905,794 | 156931 | 85858 | 27208 | 16663 | 36.3 | 33.8 | 42.1 | 30.2 | 110 | 76 | 30 | 4 |