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Fig. 3 | BMC Genomics

Fig. 3

From: Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)

Fig. 3

Comparison of the performance of the two strategies for mitogenome generation. A. Mapping strategy, including the six mappers BWA v0.7.17 [15, 16], Bowtie2 v2.4.4 [17], Bowtie v1.3.1 [18], Minimap2 v2.17 [19], BBMap v38.84 [20], and Geneious [Biomatters Ltd.]. B. De novo assembly strategy using the seven assemblers MEGAHIT v1.2.9 [18], SPAdes v3.14.1 [19], rnaSPAdes v3.14.1 [20], MitoFlex v0.2.9 [21], MitoZ v2.3 [22], MITObim v 1.9.1 [23], and NOVOPlasty v2.7.2 [3]

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BMC Genomics

ISSN: 1471-2164

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