Table 3 Summary of results from RepeatMasker v4.0.8, run with rmblastn v2.6.0+. This table corresponds to the classification of 1,410,344,530 bp (GC content of 38.40%) of repetitive DNA in the draft genome assembly of Ophioderma brevispinum. (*) Most repeats fragmented by insertions or deletions have been counted as one element
| Â | Number of elements (*) | Length occupied (bp) | Percentage of sequence |
|---|---|---|---|
SINEs | 20,483 | 2,893,927 | 0.11% |
ALUs | 0 | 0 | 0.00% |
MIRs | 20483 | 2893927 | 0.11% |
LINEs | 356,695 | 144,072,365 | 5.37% |
LINE1 | 25 | 1,598 | 0.00% |
LINE2 | 142,719 | 53,518,810 | 1.99% |
L3/CR1 | 21,833 | 7,360,396 | 0.27% |
LTR elements | 44174 | 30,059,426 | 1.12% |
ERVL | 15 | 795 | 0.00% |
ERVL-MaLRs | 0 | 0 | 0.00% |
ERV_classI | 1 | 47 | 0.00% |
ERV_classII | 15 | 963 | 0.00% |
DNA elements | 68,647 | 19,627,664 | 0.73% |
hAT-Charlie | 295 | 13,023 | 0.00% |
TcMar-Tigger | 0 | 0 | 0.00% |
Unclassified | 4,673,979 | 1,143,432,629 | 42.59% |
Total interspersed repeats | Â | 1,340,086,011 | 49.91% |
Small RNA | 0 | 0 | 0.00% |
Satellites | 219 | 83,876 | 0.00% |
Simple repeats | 644,098 | 68,988,714 | 2.57% |
Low complexity | 72,298 | 4,790,218 | 0.18% |