Table 1 RVFV Lineage defining single nucleotide polymorphisms (SNPs) in Glycoprotein (Gn) gene. For each lineage sequences, SNPs were identified in comparison to the reference (strain ZH-548). Since the reference strain falls within lineage A, there were no observed SNPs in the category
From: Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Lineage | SNPs | Total |
|---|---|---|
A | Â | 1 |
B | 830GA;1103TC;1142TC;1304GA | 4 |
C | 836TA;926GA;1103TC;1163CT;1190TC;1241AG | 6 |
D | 839TC;926GA;1103TC;1142TC;1163CT;1195GA | 6 |
E | 854TA;926GA;1103TC;1142TC;1163CT;1166AG | 6 |
F | 816AG;902GA;926GA;1079GA;1103TC;1106GA;1142TC;1163CT;1253GA | 9 |
G | 926GA;1103TC;1142TC;1163CT | 4 |
H | 920AG;926GA;1103TC;1142TC;1157AG;1163CT;1169AT | 7 |
I | 833CT;920AG;986CT;998TC;1049GA;1103TC;1115GA;1142TC;1163CT;1304GA | 10 |
J | 836TC;860CT;920AG;926GA;953AG;995GA;1007CA;1055TC;1115GA;1142TC;1154GA;1160GA;1161TC;1163CT;1190TC;1250TC | 16 |
K | 894CT;1091TC;1115GA;1142TC;1250TC | 5 |
L | 842GA;866CT;917CT;920AG;926GA;1103TC;1115GA;1122CT;1124AG;1142TC;1163CT;1190TC;1250TC;1274AT;1304GA | 15 |
M | 857GA;894CT;920AG;924TC;926GA;992GT;1103TC;1115GA;1142TC;1151TC;1163CT;1250TC;1304GA | 13 |
N | 920AG;926GA;1103TC;1112GA;1115GA;1142TC;1163CT;1187GA;1304GA | 9 |
O | 920AG;926GA;1103TC;1106GA;1115GA;1142TC;1163CT;1205AG;1243AG;1250TC;1304GA | 11 |