Table 2 Validation/testing of the RVFV Typing tool to classify partial and whole genome sequences (n = 128) using glycoprotein sequences. The classification results were compared to manual phylogenetic analysis. Abbreviations as used in this table: TP True Positives, TN True Negatives, FP False Positives, FN False Negatives, TPR True Positive Rate, FPR False Positive Rate, ACC Accuracy
From: Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Lineage | Known | TP | TN | FP | FN | TPR | FPR | ACC |
|---|---|---|---|---|---|---|---|---|
A | 13 | 13 | 115 | 0 | 0 | 100.0 | 0.0 | 100.0 |
B | 1 | 1 | 127 | 0 | 0 | 100.0 | 0.0 | 100.0 |
C | 44 | 44 | 84 | 0 | 0 | 100.0 | 0.0 | 100.0 |
D | 1 | 1 | 127 | 0 | 0 | 100.0 | 0.0 | 100.0 |
E | 7 | 7 | 121 | 0 | 0 | 100.0 | 0.0 | 100.0 |
F | 1 | 1 | 127 | 0 | 0 | 100.0 | 0.0 | 100.0 |
G | 8 | 8 | 120 | 0 | 0 | 100.0 | 0.0 | 100.0 |
H | 12 | 12 | 116 | 0 | 0 | 100.0 | 0.0 | 100.0 |
I | 2 | 2 | 126 | 0 | 0 | 100.0 | 0.0 | 100.0 |
J | 1 | 1 | 127 | 0 | 0 | 100.0 | 0.0 | 100.0 |
K | 11 | 11 | 117 | 0 | 0 | 100.0 | 0.0 | 100.0 |
L | 10 | 10 | 118 | 0 | 0 | 100.0 | 0.0 | 100.0 |
M | 2 | 2 | 126 | 0 | 0 | 100.0 | 0.0 | 100.0 |
N | 13 | 13 | 115 | 0 | 0 | 100.0 | 0.0 | 100.0 |
O | 2 | 2 | 126 | 0 | 0 | 100.0 | 0.0 | 100.0 |