Skip to main content
Fig. 1 | BMC Genomics

Fig. 1

From: Shrimp genome sequence contains independent clusters of ancient and current Endogenous Viral Elements (EVE) of the parvovirus IHHNV

Fig. 1

Schematic diagrams of IHHNV-EVE clusters in the draft Penaeus monodon WGS. A and B Sequence diagrams for Cluster 1 and 2, respectively, in PC35 with high homology to the non-infectious IHHNV-A query portion (1–3025 bp) of the GenBank record DQ228358. Some of the EVE sequences in the 2 clusters correspond to the same region of DQ228358 (i.e., the same color) but may differ in length and in reading direction indicated by arrowheads. Others are unique to each cluster. A zoom-in expansion of each EVE cluster is shown beneath. Colored numbers below indicate the nucleotide positions corresponding to GenBank record DQ228358. The portion of the record related to the host transposable-element portion of DQ228358 is indicated by a dark brown arrow. C Diagram of the IHHNV-EVE cluster in PC7 (GenBank accession no. JABERT010000007.1) with EVE showing high sequence identity (99%) to GenBank record AF218266 for infectious IHHNV. The numbers below the arrows represent the matching positions AF218266

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us