Table 1 Lengths of the EVE and intervening sequences in the 3 clusters found in the draft WGS of Thai P. monodon
EVE no. | Size (bp) | Identity | Gap (bp) | Labeled color (related to Fig. 1) | Nucleotide position on PC35 | Nucleotide position on DQ228358/sequence direction |
|---|---|---|---|---|---|---|
PC35 Cluster 1 related to DQ228358 (shown in Fig. 1A) | ||||||
1 | 49 | 100% | 8 | Purple | 770,826–770,874 | 2327–2375/plus |
2 | 122 | 99% | 3 | Navy blue | 770,882–771,003 | 1180–1301/plus |
3 | 577 | 98% | 0 | Dark green | 771,000–771,576 | 701–1277/plus |
4 | 320 | 99% | 348 | Light yellow | 771,576–771,895 | 2269–2588/plus |
5 | 126 | 98% | 128 | Pink | 772,243–772,368 | 1374–1499/plus |
6 | 562 | 95% | 2923 | Blue | 777,570–777,009 | 1382–1943/minus |
7 | 268 | 97% | Light blue | 775,890–775,623 | 1–268/minus | |
Mean | 237 | 568 | ||||
SD | 176 | 1161 | ||||
PC35 Cluster 2 related to DQ228358 (shown in Fig. 1B) | ||||||
1 | 946 | 97% | 2 | Light brown | 863,149–864,085 | 1382–2327/plus |
2 | 68 | 93% | 8 | Black | 864,145–864,083 | 2368–2435/minus |
3 | 203 | 89% | 234 | Gray | 864,344–864,153 | 1647–1849/minus |
4 | 215 | 91% | 14 | Brown | 864,578–864,781 | 1–215/plus |
5 | 730 | 91% | 189 | Purple | 864,970–865,679 | 2460–3189/minus |
6 | 81 | 99% | 194 | Cyan | 865,693–865,773 | 2611–2691/plus |
7 | 361 | 88% | 8125 | Light orange | 865,967–866,315 | 2898–3258/plus |
8 | 321 | 97% | 1169 | Dark blue | 874,530–874,848 | 2269–2588/minus |
9 | 499 | 98% | 0 | Dark green | 874,848–875,346 | 779–1277/minus |
10 | 126 | 98% | 521 | Light green | 876,515–876,643 | 1374–1499/minus |
11 | 207 | 87% | 15 | Dark blue | 877,164–877,379 | 2382–2588/minus |
12 | 129 | 89% | 43 | Dark blue | 877,422–877,551 | 2269–2397/minus |
13 | 577 | 88% | Dark green | 878,142–877,551 | 701–1277/minus | |
Mean | 342 | 876 | ||||
SD | 272 | 2308 | ||||
PC7 Cluster 3 related to AF218266 (shown in Fig. 1C) | ||||||
1 | 258 | 97% | 0 | Yellow | 40,035,318–40,035,062 | 142–399/minus |
2 | 1244 | 96% | 101 | Blue | 40,035,318–40,036,561 | 968–2211/plus |
3 | 1996 | 96% | 2 | Light brown | 40,026,662–40,038,657 | 1046–3041/plus |
4 | 341 | 96% | 0 | Brown | 40,038,999–40,038,659 | 1038–1378/minus |
5 | 3327 | 96% | 0 | Purple | 40,038,998–40,042,323 | 583–3909/plus |
6 | 80 | 95% | Light blue | 40,042,247–40,042,326 | 1–80/plus | |
Mean | 1207 | 21 | ||||
SD | 1268 | 45 | ||||