Table 1 General sequencing, assembly, and genomic characteristics of the Vagococcus fluvialis genomes
Strain | Origin | Chromosome length (Mb) | Long-read coverage | Short-read coverage | BUSCO completeness | K-mer completeness | CheckM completeness (contamination) | CDSs | tRNA genes | rRNA genes (5S, 16S, 23S) | CRISPRs (Spacers, Cas) | GC % |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
12B2 | Sponge | 2.77 | 114x | 316x | 99.5% | 99.77% | 99.45% (0.83%) | 2774 | 78 | 21 (7, 7, 7) | 2 (2, 0) | 32.7 |
35B2 | Sponge | 2.77 | 182x | 198x | 99.5% | 99.69% | 99.45% (0.83%) | 2772 | 78 | 21 (7, 7, 7) | 2 (2, 0) | 32.7 |
110B2 | Sponge | 2.77 | 84x | 250x | 99.5% | 100.00% | 99.45% (0.83%) | 2783 | 78 | 21 (7, 7, 7) | 2 (2, 0) | 32.7 |
25B2 | Sponge | 2.76 | 171x | 280x | 99.5% | 99.93% | 99.45% (0.55%) | 2720 | 77 | 21 (7, 7, 7) | 1 (1, 0) | 32.6 |
36B2 | Sponge | 2.81 | 140x | 278x | 99.5% | 99.95% | 99.45% (0.28%) | 2764 | 78 | 21 (7, 7, 7) | 3 (3, 0) | 32.6 |
DSM5731 | Chicken | 2.65 | NA | 553x | 99.5% | NA | 99.45% (0.83%) | 2604 | 36 | 6 (4, 1, 1) | 2 (2, 1) | 32.4 |
NCDO2497 | Chicken | 2.65 | NA | 197x | 99.5% | NA | 99.45% (0.83%) | 2610 | 42 | 4 (2, 1, 1) | 1 (2, 1) | 32.4 |
UFMGH6 | Bovine | 2.68 | NA | 182x | 99.5% | NA | 99.45% (0.83%) | 2663 | 50 | 4 (2, 1, 1) | 1 (1, 1) | 32.4 |
UFMGH6B | Bovine | 2.85 | NA | 38x | 99.5% | NA | 99.45% (3.04%) | 2825 | 50 | 5 (3, 1, 1) | 2 (32, 2) | 33.6 |
UFMGH7 | Bovine | 2.99 | NA | 165x | 99.5% | NA | 99.45% (0.83%) | 2937 | 52 | 4 (2, 1, 1) | 1 (1, 1) | 32.3 |
DIV0015 | Aquarium water | 2.88 | NA | 73x | 99.5% | NA | 99.45% (0.28%) | 2779 | 22 | 3 (1, 1, 1) | 0 (0, 0) | 32.3 |
DIV0038b | Chicken | 2.83 | NA | 56x | 99.5% | NA | 99.45% (0.28%) | 2750 | 29 | 4 (2, 1, 1) | 1 (1, 2) | 32.3 |
DIV0068 | Aquarium water | 2.74 | NA | 124x | 99.5% | NA | 99.45% (0.97%) | 2749 | 16 | 3 (1, 1, 1) | 1 (1, 4) | 32.4 |
DIV0098 | Aquarium water | 2.68 | NA | 59x | 99.5% | NA | 99.45% (0.41%) | 2597 | 22 | 3 (1, 1, 1) | 1 (36, 4) | 32.3 |
DIV0648b | Turkey | 3.13 | NA | 129x | 99.5% | NA | 99.45% (0.28%) | 3048 | 28 | 3 (1, 1, 1) | 1 (1, 0) | 32.3 |
DIV0657d | Turkey | 2.74 | NA | 53x | 99.5% | NA | 99.45% (0.97%) | 2747 | 15 | 3 (1, 1, 1) | 0 (0, 4) | 32.4 |
MSG3302 | Turtle | 2.76 | NA | 159x | 99.5% | NA | 99.45% (0.83%) | 2767 | 8 | 3 (1, 1, 1) | 0 (0, 0) | 32.3 |