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Fig. 3 | BMC Genomics

Fig. 3

From: Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo

Fig. 3

Phylogeny of selected Chlamydia species (A) and whole genome NeighborNet network analysis of C pecorum (B). A The box shows the relationship between the two sequenced C. pecorum genomes and others Chlamydia species (C. trachomatis, C. psittaci, C. abortus and C. pneumoniae). The maximum-likelihood tree was reconstructed using OrthoFinder v. 2.4.0 with modeltest-ng v 0.1.7 based on the nucleotide sequences of the identified single copy orthologs genes present in all organism (753). B The box shows the phylogenetic network of a whole genome sequence alignment of C. pecorum, where the PV6959 isolate is completely separate from other strains. The scale bar indicates the expected substitutions per site. The figure was generated using SplitsTree4

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BMC Genomics

ISSN: 1471-2164

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