Table 1 Functional classification of genes and physical location of the B. chinense mt genome
From: Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC
Group of genes | Gene name | Length(bp) | Start codon | Stop codon | Amino acid |
|---|---|---|---|---|---|
NADH dehydrogenase | nad1 | 978 | ATG | TAA | 326 |
nad2 | 1467 | ATG | TAA | 489 | |
nad3 | 357 | ATG | TAA | 119 | |
nad4 | 1488 | ATG | TGA | 496 | |
nad4L | 303 | ATG | TAA | 101 | |
nad5 | 2013 | ATG | TAA | 671 | |
nad6 | 618 | ATG | TAA | 206 | |
nad7(2) | 1185 | ATG | TAG | 395 | |
nad9 | 573 | ATG | TAA | 191 | |
ATP synthase | atp1 | 1527 | ATG | TGA | 509 |
atp4 | 579 | ATG | TAA | 193 | |
atp6 | 795 | ATG | TGA | 265 | |
atp8 | 690 | ATG | TAG | 230 | |
atp8 | 822 | ATG | TAG | 274 | |
atp9 | 225 | ATG | CAA(TAA) | 75 | |
Cytochrome c biogenesis | ccmB | 621 | ATG | TGA | 207 |
ccmC | 753 | ATG | TGA | 251 | |
ccmFc | 1317 | ATG | CGA(TGA) | 439 | |
ccmFn | 1740 | ATG | TGA | 580 | |
Cytochrome c oxidase | cox1 | 1497 | ATG | TAA | 499 |
cox2 | 795 | ATG | TAA | 265 | |
cox3 | 798 | ATG | TGA | 266 | |
Maturases | matR | 1968 | ATG | TAG | 656 |
Ubiquinol cytochrome c reductase | cob(2) | 1695 | ATG | TAG | 565 |
Ribosomal proteins (LSU) | rpl10 | 462 | ATG | TGA | 154 |
rpl16 | 516 | ATG | TAA | 172 | |
rpl5 | 555 | ATG | TAA | 185 | |
Ribosomal proteins (SSU) | rps1 | 606 | ATG | TAA | 202 |
rps10 | 330 | ATG | TAA | 110 | |
rps12 | 378 | ATG | TGA | 126 | |
rps13 | 351 | ATG | TAA | 117 | |
rps14 | 303 | ATG | TAA | 101 | |
rps4(2) | 918 | ATG | TAA | 306 | |
rps7 | 447 | ATG | TAA | 149 | |
Transport membrane protein | mttB(2) | 375 | ATG | TAG | 125 |
Ribosomal RNAs | rrn18 | 1764 | Â | Â | Â |
rrn26(2) | 3252 | Â | Â | Â | |
rrn5 | 117 | Â | Â | Â | |
Transfer RNAs | trnC-GCA | 71 | Â | Â | Â |
trnD-GUC | 74 | Â | Â | Â | |
trnE-UUC | 72 | Â | Â | Â | |
trnF-AAA(2) | (85,85) | Â | Â | Â | |
trnF-GAA(2) | (74,74) | Â | Â | Â | |
trnG-GCC(2) | (72,72) | Â | Â | Â | |
trnH-GUG | 74 | Â | Â | Â | |
trnI-UAU | 76 | Â | Â | Â | |
trnK-CUU(2) | (73,73) | Â | Â | Â | |
trnK-UUU | 73 | Â | Â | Â | |
trnL-UAA | 70 | Â | Â | Â | |
trnM-CAU(6) | (73,73,77,73,73,73) | Â | Â | Â | |
trnN-GUU | 72 | Â | Â | Â | |
trnP-CGG | 88 | Â | Â | Â | |
trnP-UGG(2) | (75,75) | Â | Â | Â | |
trnQ-UUG(2) | (72,72) | Â | Â | Â | |
trnS-GCU(2) | (88,88) | Â | Â | Â | |
trnS-UGA | 87 | Â | Â | Â | |
trnV-CAC(3) | (72,72,72) | Â | Â | Â | |
trnW-CCA | 74 | Â | Â | Â | |
trnY-GUA | 83 | Â | Â | Â |