Table 2 Comparative genomics features of six Xanthomonas species
Genomic features | Xal JG43 | Xal FJ1 | Xsa DD13 | Xac 306 | Xoo PXO99A | Xcc 8004 |
|---|---|---|---|---|---|---|
Genome size (bp) | 3,773,652 | 3,756,117 | 4,889,028 | 5,274,174 | 5,240,075 | 5,148,708 |
GC content (%) | 62.98 | 63 | 69.61 | 64.7 | 64 | 65 |
Predict genes (in total) | 3,124 | 3,167 | 4,022 | 4,533 | 5,083 | 4,462 |
CDS (in total) | 3,117 | 3,083 | 4,022 | 4,434 | 4,666 | 4,309 |
Average CDS length (bp) | 1,057 | 1,016 | 1,052 | 1,032 | 1,074 | 1,023 |
plasmid | 1 | 1 | 0 | 2 | 0 | 0 |
tRNA | 53 | 51 | 34 | 53 | 55 | 54 |
rRNA operons | 6 | 6 | 6 | 6 | 6 | 6 |
Gene family number | 2,903 | 2,866 | 3,252 | 3,717 | 3,036 | 3,581 |
Unique gene families | 13 | 4 | 19 | 16 | 38 | 13 |
Unique genes | 29 | 8 | 48 | 34 | 244 | 27 |
Disease | Sugarcane leaf scald | Sugarcane leaf scald | Chlorotic streak | Asiatic citrus canker | Bacterial blight of rice | Black rot of crucifers |
Albicidin | + | + | - | - | - | - |
Secretory system | I-II, IV-V | I-II, IV-V | I-II, IV-V | I-VI | I-III, V-VI | I-V |
Colonization | Xylem | Xylem | Mesophyll | mesophyll tissue | Xylem | mesophyll tissue |