Table 3 The results of selective analyses of the vision genes in N. nycticorax
Gene | PAML-ω0 | PAML-ω1 | PAML-P | PAML-Q | BUSTED-P | BUSTED-Q | RELAX-K | RELAX-P | RELAX-Q |
|---|---|---|---|---|---|---|---|---|---|
ADAMTS18 | 0.2385 | 0.2385 | 5.158E-01 | 8.936E-01 | 0.5 | 0.46323 | 0 | 0.005 | 0.0231 |
ATP8A2 | 0.2646 | 0.0001 | 9.826E-05 | 3.301E-03 | 0.5 | 0.50859 | 1.17 | 0.002 | 0.0136 |
CCDC66 | 0.3254 | 2.5296 | 1.639E-06 | 5.679E-05 | 1.054E-18 | 6.646E-17 | 3.86 | 6.22154E-14 | 1.730E-12 |
CDON | 0.2713 | 1.0674 | 0 | 0 | 4.277E-18 | 1.796E-16 | 10.54 | 2.398E-26 | 1.335E-24 |
CHD7 | 0.0817 | 0.0817 | 9.238E-01 | 9.900E-01 | 1.837E-20 | 2.315E-18 | 35.59 | 0.0001 | 0.0015 |
CRYBA1 | 0.0477 | 0.2343 | 2.176E-04 | 4.310E-03 | 0.0001 | 0.0013 | 0.32 | 3.122E-06 | 3E-05 |
CTNS | 0.4024 | 0.4024 | 6.838E-02 | 3.833E-01 | 0.0011 | 0.0108 | 10.39 | 0 | 0 |
EPAS1 | 0.2276 | 0.2276 | 8.291E-01 | 1 | 0.5 | 0.4295 | 0.11 | 0.002 | 0.008 |
FAT3 | 0.0913 | 0.0913 | 8.275E-02 | 3.955E-01 | 1.030E-09 | 2.165E-08 | 50 | 1.99E-11 | 2.768E-10 |
FGFR2 | 0.0738 | 0.0738 | 3.157E-01 | 6.267E-01 | 0.5 | 0.4632 | 0.44 | 0.003 | 0.0151 |
FOXP2 | 0.1829 | 0.1829 | 1.735E-01 | 4.966E-01 | 0.5 | 0.4632 | 0 | 0.011 | 0.0394 |
GNA11 | 0.0001 | 0.3321 | 6.565E-04 | 1.137E-02 | 0.5 | 0.4632 | 0.15 | 0.008 | 0.0318 |
GNAQ | 0.1753 | 0.1753 | 4.591E-02 | 2.204E-01 | 0.5 | 0.5085 | 0 | 0.004 | 0.0218 |
GNAT1 | 0.0217 | 0.1128 | 5.745E-04 | 1.025E-02 | 0.5 | 0.525 | 0.89 | 0.648 | 1 |
HDAC1 | 0.0411 | 0.0411 | 1.530E-01 | 4.903E-01 | 0.5 | 0.4632 | 0 | 0.017 | 0.05 |
HPS1 | 0.1729 | 0.1729 | 9.458E-01 | 9.900E-01 | 0.019 | 0.1408 | 0.61 | 0.01 | 0.0371 |
IMPG1 | 0.2561 | 0.6748 | 2.942E-04 | 4.943E-03 | 8.481E-12 | 2.760E-10 | 0.5 | 8.008E-13 | 2.186E-11 |
IMPG2 | 0.3791 | 0.3791 | 7.494E-01 | 1 | 2.423E-11 | 2.290E-10 | 39.63 | 0.013 | 0.0464 |
MDM1 | 0.3542 | 0.3542 | 9.218E-01 | 9.900E-01 | 0.002 | 0.018 | 1.18 | 0.476 | 0.6307 |
MFN2 | 0.0505 | 0.0505 | 2.719E-01 | 5.703E-01 | 8.329E-05 | 0.0011 | 5.49 | 6.713E-05 | 0.0006 |
MITF | 0.0183 | 0.0183 | 7.086E-01 | 9.484E-01 | 4.630E-10 | 1.167E-08 | 7.68 | 0.761 | 0.8066 |
NHS | 0.1380 | 0.1380 | 1.199E-01 | 4.903E-01 | 0.5 | 0.4632 | 0.09 | 0.001 | 0.0055 |
OLFM3 | 0.1720 | 0.9096 | 4.110E-07 | 9E-06 | 3.985E-10 | 2.510E-09 | 0 | 1.894E-12 | 3.373E-11 |
OPA1 | 0.1855 | 0.1855 | 6.913E-02 | 3.833E-01 | 0.031 | 0.2055 | 0 | 0.001 | 0.0055 |
OPN4 | 0.0361 | 0.0361 | 5.956E-02 | 3.589E-01 | 0.0001 | 0.0014 | 13.37 | 9.919E-13 | 2.208E-11 |
PAX6 | 0.1595 | 0.1595 | 9.914E-01 | 9.900E-01 | 0.5 | 0.4632 | 0.15 | 0.007 | 0.0288 |
PDGFRB | 0.0564 | 0.4014 | 1.792E-04 | 4.139E-03 | 0.5 | 0.4632 | 5.54 | 0.853 | 0.8183 |
RPE65 | 0.1523 | 0.1523 | 1.923E-01 | 5.030E-01 | 0.5 | 0.4632 | 0.09 | 0.001 | 0.0055 |
RPL24 | 0.0089 | 1.4164 | 0 | 0 | 1.963E-07 | 3E-06 | 29.42 | 6.06E-12 | 9.635E-11 |
RRM1 | 0.0198 | 0.6076 | 8.728E-06 | 2.419E-04 | 0.0024 | 0.0209 | 0.07 | 0.002 | 0.0106 |
SH3PXD2B | 0.1368 | 0.1368 | 5.E-02 | 3.300E-01 | 1.790E-10 | 5.641E-09 | 17.08 | 1.529E-12 | 2.838E-11 |
SKI | 0.0631 | 0.6871 | 0 | 0 | 8.824E-08 | 1.5E-06 | 0.2 | 3.898E-23 | 1.446E-21 |
SLC4A10 | 0.1424 | 0.1424 | 3.260E-01 | 6.365E-01 | 0.417 | 0.4632 | 0 | 9.367E-05 | 0.0008 |
SLC7A11 | 0.2571 | 0.2571 | 9.602E-01 | 1 | 7.536E-05 | 0.0003 | 2.37 | 0.001 | 0.0059 |
SMAD3 | 0.0281 | 0.0281 | 7.100E-01 | 9.484E-01 | 0.5 | 0.4632 | 0 | 0.0002 | 0.0021 |
TTC8 | 0.2426 | 0.2426 | 2.313E-02 | 1.554E-01 | 0.5 | 0.5085 | 0 | 0.001 | 0.0091 |
UCHL3 | 0.1590 | 0.1590 | 1.460E-01 | 3.774E-01 | 0.5 | 0.5085 | 0 | 0.007 | 0.0318 |
UNC119 | 0.0264 | 0.0264 | 4.437E-03 | 6.833E-02 | 0.001 | 0.0105 | 50 | 0.006 | 0.0256 |
VEGFA | 0.6017 | 0.6017 | 8.976E-01 | 9.9E-01 | 0.003 | 0.0236 | 46.91 | 3.583E-05 | 0.0003 |
WDR19 | 0.1118 | 0.1118 | 4.362E-01 | 1 | 5.819E-21 | 1.099E-19 | 0.97 | 0.889 | 0.85 |