Table 4 The results of the selective analyses of the vision genes in C. cochlearius
Gene | PAML-ω0 | PAML-ω1 | PAML-P | PAML-Q | BUSTED-P | BUSTED-Q | RELAX-K | RELAX-P | RELAX-Q |
|---|---|---|---|---|---|---|---|---|---|
ADAMTS18 | 0.2385 | 0.2385 | 4.639E-03 | 8.160E-02 | 0.5 | 5.21E-01 | 1.16 | 0.002 | 0.0184 |
ALDH1A3 | 0.0315 | 0.0315 | 8.359E-02 | 4.524E-01 | 0.002 | 8.39E-02 | 0.32 | 0.006 | 0.0378 |
CACNB2 | 0.1851 | 0.1851 | 1.489E-01 | 5.051E-01 | 0.5 | 5.21E-01 | 0 | 0.001 | 0.0108 |
CCDC66 | 0.5134 | 0.0175 | 2.815E-06 | 9.902E-05 | 0.5 | 5.21E-01 | 1 | 1 | 0.8932 |
CRB1 | 0.1249 | 0.0212 | 3.556E-07 | 1.668E-05 | 0.0035 | 8.39E-02 | 2.51 | 5.349E-05 | 0.0011 |
EPAS1 | 0.2276 | 0.2276 | 1.937E-01 | 6.102E-01 | 0.5 | 5.00E-01 | 0 | 0.001 | 0.0073 |
EPHB1 | 0.0485 | 0.0485 | 2.102E-02 | 2.201E-01 | 0.5 | 5.21E-01 | 15.9 | 1.384E-05 | 0.0003 |
FOXP2 | 0.1829 | 0.1829 | 9.362E-02 | 4.841E-01 | 0.5 | 5.21E-01 | 0 | 0.005 | 0.0374 |
JAG1 | 0.0328 | 0.0328 | 1.439E-01 | 5.051E-01 | 0.5 | 5.21E-01 | 0 | 0.007 | 0.0418 |
MAP3K1 | 0.2610 | 0.2610 | 5.521E-02 | 3.237E-01 | 0.5 | 5.21E-01 | 0 | 0.001 | 0.0108 |
MED1 | 0.0319 | 0.1132 | 1.036E-03 | 2.429E-02 | 6.801E-05 | 9.64E-03 | 0.64 | 0.0004 | 0.0062 |
MEGF11 | 0.1747 | 0.1747 | 2.070E-02 | 2.201E-01 | 0.5 | 5.21E-01 | 46.41 | 0.002 | 0.0184 |
MYO7A | 0.0001 | 0.0001 | 1 | 1 | 0.5 | 5.00E-01 | 15.7 | 0.006 | 0.0176 |
OPA1 | 0.1855 | 0.1855 | 3.263E-02 | 3.061E-01 | 0.5 | 5.21E-01 | 0 | 7.505E-06 | 0.0002 |
OPN4 | 0.0361 | 0.0361 | 1.507E-01 | 5.051E-01 | 0.5 | 5.21E-01 | 0 | 5.853E-07 | 3.503E-05 |
PDGFRB | 0.0754 | 0.0077 | 4.477E-04 | 1.260E-02 | 0.5 | 5.21E-01 | 1.12 | 0.594 | 0.7279 |
RNF2 | 0.0442 | 0.0203 | 0 | 0 | 0.5 | 5.21E-01 | 1.21 | 0.88 | 0.8917 |
SLC25A25 | 0.0099 | 0.0099 | 4.839E-01 | 7.612E-01 | 0.003 | 8.39E-02 | 18.88 | 7.371E-10 | 8.822E-08 |
SLC4A10 | 0.1424 | 0.1424 | 3.054E-01 | 6.319E-01 | 0.5 | 5.21E-01 | 0 | 8.979E-05 | 0.0015 |
SLC7A11 | 0.2571 | 0.2571 | 4.125E-03 | 9.096E-02 | 0.5 | 5.00E-01 | 0 | 0.002 | 0.0098 |
SMAD3 | 0.0281 | 0.0281 | 5.467E-01 | 8.013E-01 | 0.5 | 5.21E-01 | 0 | 0.0003 | 0.0054 |
SOX14 | 0.0151 | 0.0151 | 9.751E-01 | 1 | 0.5 | 5.21E-01 | 0 | 7.505E-06 | 0.0002 |
TULP3 | 0.2277 | 0.1016 | 7.272E-230 | 5.116E-228 | 0.02 | 4.05E-01 | 1.58 | 0.131 | 0.3038 |
WDR19 | 0.1118 | 0.1118 | 4.995E-02 | 3.671E-01 | 0.5 | 5.00E-01 | 2.3 | 0.003 | 0.0110 |