Table 1 Predicted cis-regulatory elements by using the Rfam database [62, 63]

Cobalamin riboswitch

530,889

531,128

118.2

+

530,905

530,801

Guanidine-I riboswitch*

119,571

119,680

75.6

–

119,678

SAM riboswitch

3,457,791

3,457,868

69.5

–

3,457,976

3,457,976

Glycine riboswitch

3,661,824

3,661,919

68.7

+

3,661,819

3,661,819

TPP riboswitch

72,546

72,658

70.6

+

72,467

72,558

manganese riboswitch*

2,189,415

2,189,528

49

–

2,189,523

2,189,523

rpsB*

1,038,575

1,038,671

46.8

+

1,038,568

1,038,569

Guanidine-II riboswitch*

3,082,026

3,082,072

45.7

+

3,082,019

3,082,019

BjrC80 sRNA*

1,456,741

1,456,921

43.4

–