Table 2 Gene list in the CPGs of six subgenus Gynopodium species

Self-replication

RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

4

Ribosomal proteins (SSU)

rps2, rps3, rps4, rps7 (× 2), rps8, rps11, rps12 (× 2)*, rps14, rps15, rps16*, rps18, rps19

14

Ribosomal proteins (LSU)

rpl2 (× 2)*, rpl14, rpl16*, rpl20, rpl23 (× 2), rpl32, rpl33, rpl36

10

Transfer RNAs

37 tRNAs (7 in the IRs (× 2))

37

Ribosomal RNAs

rrn4.5 (× 2), rrn5 (× 2), rrn16 (× 2), rrn23 (× 2)

8

Photosynthesis

Photosystem I

psaA, psaB, psaC, psaI, psaJ

5

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

15

Cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

6

ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

6

NADH dehydrogenase

ndhA*, ndhB (× 2)*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

12

RubisCO large subunit

rbcL

1

Other genes

-

ycf1, ycf2 (× 2), ycf3, ycf4, ycf15 (× 2)

7

accD, clpP*, matK, ccsA, cemA, infA

6