Fig. 3
Gene Expression Dynamics Provide Novel Insights into the Neural Default State. A Number of differentially expressed genes between successive developmental stages of the epidermal and neural lineage, padj ≤ 0.05 B Venn Diagrams for the total number of DE genes between stages for the epidermal and neural lineages, as well as the number of genes increasing and decreasing over time. C TPM of Foxi1, Foxi2 and Grhl1, revealing epidermal onset dynamics. Graph shows sum of S + L allele. Width of the line represents SEM of three biological replicates. D Number of differentially expressed genes between lineages at each developmental stage (padj ≤ 0.05). E Graphs of the TPM of three pluripotency markers maintained in the neural lineage (E) Sox3, Sox11, and Zic1. Graphs are sums of S + L allele. Width of the line represents SEM of three biological replicates