Table 1 Summary of 17 complete chloroplast genomes of Mahonia
From: Phylogenomics, plastome structure and species identification in Mahonia (Berberidaceae)
Species | Voucher number | Number of reads | Average depth of coverage ( ×) | Total size (bp) | Total GC% | LSC | SSC | IR | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
size (bp) | GC% | size (bp) | GC% | size (bp) | GC% | ||||||
M. bealei | RC601 | 18,802,778 | 147.3 | 165,713 | 38% | 73,516 | 36.4% | 18,773 | 32.2% | 36,712 | 41.2% |
M. duclouxiana | RC602 | 25,347,900 | 1099.9 | 165,384 | 38.1% | 73,477 | 36.4% | 18,563 | 32.4% | 36,672 | 41.2% |
M. napaulensis | RC603 | 16,952,962 | 275.3 | 165,216 | 38.1% | 73,313 | 36.5% | 18,563 | 32.4% | 36,670 | 41.2% |
M. cardiophylla | RC604 | 18,211,456 | 537.9 | 165,559 | 38.1% | 73,353 | 36.4% | 18,802 | 32.3% | 36,702 | 41.2% |
M. nitens | RC605 | 19,474,194 | 1456.3 | 165,692 | 38.1% | 73,703 | 36.4% | 18,655 | 32.4% | 36,667 | 41.2% |
M. gracilipes | RC606 | 17,893,824 | 575.3 | 165,909 | 38% | 73,451 | 36.4% | 18,730 | 32.4% | 36,864 | 41.1% |
M. polyodonta | RC607 | 17,570,436 | 779.1 | 165,526 | 38.1% | 73,280 | 36.5% | 18,804 | 32.4% | 36,721 | 41.2% |
M. bodinieri | RC608 | 16,171,718 | 395.3 | 165,697 | 38% | 73,594 | 36.4% | 18,675 | 32.4% | 36,714 | 41.1% |
M. shenii | RC609 | 17,804,842 | 778.8 | 165,928 | 38.1% | 73,528 | 36.4% | 18,764 | 32.3% | 36,818 | 41.1% |
M. oiwakensis | RC610 | 22,462,532 | 80.4 | 165,267 | 38.1% | 73,198 | 36.5% | 18,721 | 32.4% | 36,674 | 41.2% |
M. breviracema | RC611 | 15,790,898 | 408.3 | 165,555 | 38.1% | 73,365 | 36.4% | 18,706 | 32.3% | 36,742 | 41.1% |
M. fordii | RC612 | 23,844,540 | 165.2 | 165,689 | 38% | 73,558 | 36.4% | 18,705 | 32.4% | 36,713 | 41.1% |
M. hancockiana | RC613 | 18,513,816 | 150.6 | 165,495 | 38.1% | 73,483 | 36.4% | 18,670 | 32.4% | 36,671 | 41.2% |
M. eurybracteata | RC614 | 15,910,170 | 389.3 | 165,612 | 38.1% | 73,474 | 36.4% | 18,734 | 32.4% | 36,702 | 41.2% |
M. japonica | RC615 | 24,350,910 | 310 | 165,711 | 38% | 73,685 | 36.4% | 18,676 | 32.4% | 36,675 | 41.1% |
M. aquifolium | RC616 | 19,912,290 | 37.4 | 165,689 | 38.1% | 73,212 | 36.5% | 18,873 | 32.4% | 36,802 | 41.1% |
M. pinnata | RC618 | 18,121,752 | 35.8 | 165,308 | 38.1% | 73,313 | 36.5% | 18,713 | 32.4% | 36,641 | 41.2% |