Table 2 Sequence characteristics of eight highly variable regions among 20 plastomes
From: Phylogenomics, plastome structure and species identification in Mahonia (Berberidaceae)
Region | Aligned length | Variable sites | Indels | Nucleotide diversity (Pi) | ||
|---|---|---|---|---|---|---|
No | % | No | Length range | |||
petN-psbM | 661 | 27 | 4.08 | 24 | 1–9 | 0.0974 |
ndhC-trnV | 1603 | 47 | 2.93 | 137 | 1–38 | 0.00580 |
atpB-rbcL | 1134 | 11 | 0.970 | 405 | 1–171 | 0.00311 |
accD | 1827 | 90 | 4.93 | 497 | 1–165 | 0.01391 |
rpl20-clpP | 1429 | 41 | 2.87 | 55 | 1–13 | 0.00522 |
ψycf1 | 1425 | 43 | 3.02 | 118 | 1–54 | 0.00712 |
ccsA-ndhD | 259 | 26 | 10.0 | 23 | 0–23 | 0.04237 |
ycf1 | 5820 | 114 | 1.96 | 352 | 1–78 | 0.00478 |