Table 2 Similarity of expected MTAs using assigned SNPs for pGWAS and eGWAS

MTA

283

362

358

294

194

364

361

301

Same as pGWAS

-

212

230

195

-

137

139

122

Different with pGWAS

-

151

129

100

-

228

223

180

pGWAS is the same as eGWAS(BRR,gBLUP,rrBLUP)

239

-

-

-

146

-

-

-

Similarity(%)

-

74.91

81.27

68.90

-

70.61

71.64

62.88

GO

12

18

15

16

13

22

20

16

Same as pGWAS

-

8

8

7

-

10

9

8

Different with pGWAS

-

10

7

9

-

12

11

8

pGWAS is the same as eGWAS(BRR,gBLUP,rrBLUP)

8

-

-

-

10

-

-

-

Similarity(%)

-

66.67

66.67

58.33

-

76.92

69.23

61.53