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Table 7 Imputation quality under various simulation coefficient settings with fixed \(p=500\) and \(pcnt=1/3\)

From: Assisted clustering of gene expression data using regulatory data from partially overlapping sets of individuals

Median \({R}^{2}\) (range)

\(q\)

200

400

500

600

800

1000

\(n\)

300

0.056

(1e-06, 0.65)

0.039

(3e-07, 0.53)

0.036

(1e-07, 0.42)

0.036

(1e-06, 0.52)

0.033

(5e-07, 0.56)

0.039

(4e-07, 0.56)

500

0.065

(3e-06, 0.66)

0.059

(2e-06, 0.53)

0.053

(2e-07, 0.6)

0.043

(9e-07, 0.52)

0.044

(3e-06, 0.57)

0.041

(2e-06, 0.45)

1000

0.099

(1e-08, 0.72)

0.073

(4e-09, 0.6)

0.071

(1e-05, 0.57)

0.066

(5e-07, 0.6)

0.069

(3e-06, 0.53)

0.063

(6e-05, 0.5)

1200

0.111

(6e-07, 0.75)

0.083

(1e-07, 0.6)

0.084

(1e-04, 0.58)

0.087

(2e-06, 0.63)

0.076

(7e-10, 0.57)

0.06

(2e-06, 0.57)

1500

0.131

(8e-05, 0.78)

0.1

(2e-05, 0.63)

0.097

(2e-06, 0.64)

0.088

(6e-05, 0.55)

0.074

(3e-06, 0.57)

0.069

(1e-08, 0.52)

  1. Imputation quality under varying proportions of overlapping individuals (\(pcnt\)) is summarized in the supplementary materials