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Table 4 Candidate genes in the five QTLs in across-breed metaGWAS

From: Meta-analysis of genome-wide association studies uncovers shared candidate genes across breeds for pig fatness trait

SSC

QTL Position

Candidate Genes

1

52,666,889 ~ 54,666,889

KCNQ5 c, CYB5R4c, CEP162c, NT5Eb

1

155,986,286 ~ 161,824,864

PHLPP1 bc, RELCHabc, RNF152b, CDH20b, MC4Rabc, CCBE1b, GRPc, SEC11Cc, ALPK2b

2

59,697,443 ~ 61,697,443

MAST3 c, JAK3a, B3GNT3a, SLC27A1a, NXNL1a, U3c, KLF2a, KCNN1a

7

29,476,173 ~ 31,569,645

B3GALT4 a, ITPR3abc, IP6K3a, LEMD2c, GRM4c, NUDT3c, PACSIN1c, SPDEFc, ILRUNc, SNRPCc, UHRF1BP1c, ANKS1Ac, TCP11c, SCUBE3c, PPARDabc, TEAD3c, TULP1c, FKBP5c

18

9,555,467 ~ 11,555,467

KDM7A c, TBXAS1a, ZC3HAV1c, TRIM24c, AKR1D1a, CREB3L2ab, FMC1a

  1. Superscript numbers: aGO/KEGG annotation; bPigQTLdb annotation; cNHGRI-EBI annotation