Table 1 Genes in the D. leptopodum chloroplast genome

Ribosomal proteins (LSU)

rpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36

Ribosomal proteins (SSU)

rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19

RNA polymerase

rpoA, rpoB, rpoC1, rpoC2

Ribosomal RNAs

rrn16, rrn23, rrn4.5, rrn5

Self-replication

Transfer RNAs

trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC,

trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA,

trnL-UAA, trnL-UAG, trnM-CAU, trnfM-CAU, trnN-GUU, trnP-UGG,

trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA,

trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA

Translational initiation factor

infA

ATP synthase

atpA, atpB, atpE, atpF, atpH, atpI

Protease

clpP1

RubisCO large subunit

rbcL

Genes for photosynthesis

NADH dehydrogenase

ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Cytochrome b/f complex

petA, petB, petD, petG, petL, petN

Photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunit of acetyl-CoA carboxylase

accD

Other genes

Maturase

matK

C-type cytochrome synthesis gene

ccsA

Envelope membrane protein

cemA

Genes of unknown function

Conserved open reading frames

ycf1, ycf2, ycf3, ycf4