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Table 1 Trinity de novo assembly metrics

From: Impacts of multiple anthropogenic stressors on the transcriptional response of Gammarus fossarum in a mesocosm field experiment

Basic assembly statistics

 

Trinity contigs (isoforms)

1,197,198

Trinity genes

983,707

Median contig length

354

Contig N50

855

E90N50 (25,952 genes)

2003

average remapping rate ± S.D. [%]

88.46 ± 1.84

BUSCO

C:96.4% [S:38.1%, D:58.3%], F:0.7%, M:2.9%

  1. BUSCO analysis was performed with the arthropod BUSCO dataset (1,013 BUSCOs); C = Complete, S = Single, D = Duplicated, F = Fragmented, M = Missing
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BMC Genomics

ISSN: 1471-2164

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