Table 2 Distribution of the highly significant MTAs identified using two GWAS models (P value < 0.0001)
No | Trait | Marker | CHR | Allele | Physical position (bp) | R2 (%) | Method |
|---|---|---|---|---|---|---|---|
1 | AUDPC_FDS | rs20790 | 3B | C/T | 55755 | 2.69 | MLM, mrMLM |
2 | AUDPC_FDS | rs26028 | 3B | G/T | 55755 | 2.76 | mrMLM |
3 | AUDPC_FDS_CI | rs18695 | 6D | A/G | 55761 | 2.82 | MLM, mrMLM |
4 | AUDPC_FDS_CI | rs26220 | 1B | C/G | 66042 | 2.81 | MLM, mrMLM |
5 | AUDPC_FDS_CI | rs26318 | 2D | A/T | 81616 | 2.79 | MLM, mrMLM |
6 | AUDPC_FDS_CI | rs57400 | 5B | A/G | 26242 | 2.74 | MLM |
7 | AUPPC_CI | rs2383 | 2A | C/T | 74319 | 2.54 | MLM, mrMLM |
8 | AUPPC_CI | rs5126 | 7B | C/T | 51193 | 2.49 | MLM, mrMLM |
9 | CI | rs37116 | 6B | C/G | 43284 | 2.60 | mrMLM |
10 | CI | rs6872 | 5B | C/T | 127712 | 2.48 | mrMLM |
11 | CI_FDS | rs39629 | 3A | G/T | 112886 | 2.79 | MLM |
12 | CI_FDS | rs39631 | 3A | C/G | 112886 | 2.79 | MLM |
13 | FDS | rs26889 | 2B | C/G | 60320 | 2.08 | MLM, mrMLM |
14 | FDS | rs39630 | 3A | T/C | 112886 | 2.76 | MLM |
15 | FDS_CI | rs33218 | 3B | C/G | 54619 | 2.71 | mrMLM |
16 | LR_97_12 | rs13728 | 7A | A/G | 63946 | 2.61 | MLM, mrMLM |
17 | LR_97_12 | rs15875 | 6B | C/A | 85356 | 2.50 | mrMLM |
18 | LR_97_12 | rs15876 | 6B | A/C | 85356 | 2.49 | mrMLM |
19 | LR_97_12 | rs16481 | 2D | A/T | 13642 | 2.46 | mrMLM |
20 | LR_97_12 | rs2007 | 4A | G/A | 124821 | 2.48 | mrMLM |
21 | LR_97_12 | rs2008 | 4A | C/T | 124821 | 2.48 | mrMLM |
22 | LR_97_12 | rs20781 | 4B | A/G | 57770 | 2.08 | mrMLM |
23 | LR_97_12 | rs20782 | 4B | A/G | 57770 | 2.66 | mrMLM |
24 | LR_97_12 | rs24374 | 6B | T/C | 58062 | 2.54 | MLM, mrMLM |
25 | LR_97_12 | rs24375 | 6B | T/C | 58062 | 2.54 | MLM, mrMLM |
26 | LR_97_12 | rs24376 | 6B | C/T | 58062 | 2.23 | MLM, mrMLM |
27 | LR_97_12 | rs32284 | 1B | A/G | 91068 | 2.57 | MLM, mrMLM |
28 | LR_97_12 | rs32285 | 1B | A/G | 91068 | 2.16 | MLM, mrMLM |
29 | LR_97_12 | rs33082 | 7B | G/A | 93505 | 2.16 | mrMLM |
30 | LR_97_12 | rs33083 | 7B | C/G | 93505 | 2.61 | mrMLM |
31 | LR_97_12 | rs34816 | 5B | A/G | 38769 | 2.50 | mrMLM |
32 | LR_97_12 | rs34817 | 5B | G/A | 38769 | 2.50 | mrMLM |
33 | LR_97_12 | rs39680 | 2B | G/T | 66573 | 2.46 | mrMLM |
34 | LR_97_12 | rs41570 | 6B | C/T | 62609 | 2.69 | MLM, mrMLM |
35 | LR_97_12 | rs41571 | 6B | G/C | 62609 | 2.69 | MLM, mrMLM |
36 | LR_97_12 | rs45802 | 7B | A/C | 92919 | 2.17 | mrMLM |
37 | LR_97_12 | rs4602 | 5B | C/T | 35928 | 2.56 | MLM, mrMLM |
38 | LR_97_12 | rs47722 | 7B | C/T | 92332 | 2.26 | mrMLM |
39 | LR_97_12 | rs48776 | 5B | A/C | 62719 | 2.58 | MLM |
40 | LR_97_12 | rs4961 | 6B | A/G | 62609 | 2.43 | mrMLM |
41 | LR_97_12 | rs51004 | 2B | A/G | 66004 | 2.58 | MLM, mrMLM |
42 | LR_97_12 | rs51367 | 6B | A/T | 46694 | 2.16 | MLM, mrMLM |
43 | LR_97_12 | rs57797 | 6B | A/G | 62609 | 2.53 | MLM, mrMLM |
44 | LR_97_12 | rs9211 | 1B | C/T | 46711 | 2.67 | MLM, mrMLM |
45 | LR_97_12 | rs9212 | 1B | C/T | 46711 | 2.74 | MLM, mrMLM |
46 | LR_97_12, LR_98_22 | rs28795 | 2D | A/G | 45240 | 2.36 | mrMLM |
47 | LR_97_12, LR_98_22 | rs53036 | 2B | A/G | 72825 | 3.06 | MLM, mrMLM |
48 | LR_98_12 | rs12518 | 7B | A/G | 50057 | 2.05 | mrMLM |
49 | LR_98_12 | rs25737 | 3B | C/T | 45525 | 2.65 | MLM, mrMLM |
50 | LR_98_12 | rs36084 | 5B | C/T | 45594 | 2.86 | mrMLM |
51 | LR_98_12 | rs36555 | 6B | G/A | 47831 | 2.20 | MLM, mrMLM |
52 | LR_98_12 | rs52542 | 7B | C/G | 114004 | 2.09 | mrMLM |
53 | LR_98_12 | rs58952 | 5D | G/T | 83130 | 2.08 | mrMLM |
54 | LR_98_12, LR_98_22 | rs36483 | 6B | G/T | 94461 | 3.15 | MLM, mrMLM |
55 | LR_98_12, LR_98_22 | rs36484 | 6B | C/G | 94461 | 3.15 | MLM, mrMLM |
56 | LR_98_12, LR_98_22 | rs50047 | 3B | A/C | 22764 | 3.01 | mrMLM |
57 | LR_98_12, LR_98_22, LR_97_12, LR_99_2 | rs7934 | 3A | C/T | 9116 | 2.62 | MLM, mrMLM |
58 | LR_98_22 | rs1798 | 5D | A/G | 83130 | 2.96 | mrMLM |
59 | LR_98_22 | rs1799 | 5D | A/G | 83130 | 2.96 | mrMLM |
60 | LR_98_22 | rs37446 | 6A | A/G | 25146 | 2.96 | mrMLM |
61 | LR_98_22 | rs39305 | 7B | C/T | 43237 | 3.02 | MLM |
62 | LR_98_22 | rs49543 | 1B | C/T | 56943 | 3.01 | mrMLM |
63 | LR_98_22 | rs52026 | 5A | A/T | 93664 | 2.98 | mrMLM |
64 | LR_98_22 | rs52548 | 2B | C/G | 72825 | 3.02 | MLM, mrMLM |
65 | LR_98_22, LR_98_12, LR_99_2 | rs44885 | 5D | C/T | 7959 | 2.10 | mrMLM |
66 | LR_98_22, LR98_12, LR_99_2 | rs44886 | 5D | A/G | 7959 | 2.20 | mrMLM |
67 | LR_99_2 | rs14658 | 4A | A/G | 76969 | 2.31 | mrMLM |
68 | LR_99_2 | rs15675 | 2B | C/T | 6832 | 2.24 | mrMLM |
69 | LR_99_2 | rs15676 | 2B | C/T | 6832 | 2.24 | mrMLM |
70 | LR_99_2 | rs30506 | 1A | A/G | 80900 | 2.57 | MLM, mrMLM |
71 | LR_99_2 | rs38255 | 3B | A/G | 113379 | 2.25 | mrMLM |
72 | LR_99_2 | rs44267 | 1B | C/G | 43301 | 2.08 | mrMLM |
73 | LR_99_2 | rs45341 | 3B | A/T | 113948 | 2.23 | mrMLM |
74 | LR_99_2 | rs62902 | 6B | C/G | 47831 | 2.57 | MLM, mrMLM |
75 | LR_99_2 | rs62903 | 6B | C/G | 47831 | 2.19 | MLM, mrMLM |
76 | LR_99_2 | rs6313 | 2A | A/G | 74319 | 2.19 | mrMLM |
77 | LR_99_2 | rs6314 | 2A | A/T | 74319 | 2.15 | mrMLM |
78 | LR_99_2 | rs750 | 2B | C/T | 67141 | 2.26 | mrMLM |
79 | LR_99_2 | rs9493 | 3B | A/G | 22764 | 2.85 | MLM, mrMLM |
80 | LR_99_2, LR_97_12 | rs59576 | 2D | A/G | 73660 | 2.26 | MLM, mrMLM |