Table 3 Candidate genes around the reliable MTAs and their functional annotation (P value < 0.0001)
Trait | Marker | Ch | Transcript | Position | Molecular function | Biological Process | Cellular component |
|---|---|---|---|---|---|---|---|
LR_99_2 | rs30506 | 1A | TraesCS1A02G031900 | _ | Protein kinase activity, protein binding, ATP binding | Protein phosphorylation | _ |
LR_98_22 | rs49543 | 1B | TraesCS1B02G326700 | 553,017,043–553,022,022 | RNA polymerase III general transcription initiation factor activity, DNA binding |  | Transcription factor TFIIIB complex |
LR_98_22 | rs52548 | 2B | TraesCS2B02G040200 | 18261608–18261643 | _ | _ | Integral component of membrane |
LR_99_2 | rs750 | 2B | TraesCS2B02G477000 | 673961541–673961604 | _ | _ | Integral component of membrane |
LR_99_2, LR_97_12 | rs59576 | 2D | TraesCS2D02G479000 | 580005996–580006059 | _ | _ |  |
LR_98_12, LR_98_22, LR_97_12, LR_99_2 | rs7934 | 3A | TraesCS3A02G013400 | 9783188–9783251 | Protein kinase activity, ATP binding | Protein phosphorylation | _ |
LR_97_12 | rs2007 | 4A | TraesCS4A02G441100 | 709857646–709857703 | _ | _ | _ |
LR_98_12 | rs36084 | 5B | TraesCS5B02G273100 | 458663129–458663192 | _ | _ | _ |
LR_98_22 | rs1798 | 5D | TraesCS5D02G412500 | 475,691,763–475,695,452 | Catalytic activity | _ | _ |
LR_97_12 | rs41571 | 6B | TraesCS6B02G453300 | 711,709,311–711,712,023 | Protein binding |  | _ |
LR_97_12 | rs47722 | 7B | TraesCS7B02G407200 | 676249917–676249980 | Magnesium ion binding, terpene synthase activity, lyase activity |  | _ |
LR_97_12 | rs39680 | 2B | U6 | 646960537–646960600 | _ | _ | _ |
CI | rs6872 | 5B | TraesCS5B02G501400 | 668,581,998–668,583,715 | Aspartic-type endopeptidase activity | _ | Integral component of membrane |
CI | rs37116 | 6B | TraesCS6B02G125200 | 120318178–120318241 | Protein binding | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | SCF ubiquitin ligase complex |
AUPPC_CI | rs5126 | 7B | TraesCS7B02G225900 | 426526075–426526138 | Protein binding |  |  |
LR_97_12 | rs45802 | 7B | TraesCS7B02G407200 | 676249917–676249980 | Magnesium ion binding, terpene synthase activity, lyase activity |  |  |