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Fig. 1 | BMC Genomics

Fig. 1

From: Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

Fig. 1

G. barbadense Pima-S6, Pima 3–79 HGS and Hai7124, and G. hirsutum TM-1 BUSCO statistics and repeats content. Barplots show the genome (a, b), A subgenome proteins (c, d) and D subgenome proteins (e, f) BUSCO statistics with the embryophyta_odb10 and eudicots_odb10 dataset statistics [light blue: complete (C) and single (S); blue: complete and duplicated (D); yellow: fragmented (F); red: missing (M)]. Datasets contain 1614 (embryophyta_odb10) and 2326 eudicots_odb10) entries (n). Genome BUSCO statistics indicate that the Pima-S6 genome assembly is complete and comparable to those of Pima 3–79 HGS, Hai7124 and TM-1. Protein BUSCO statistics show an improvement when compared to Pima 3–79 HGS, Hai7124 or TM-1. (g) Transposons content in these four genome assemblies. LTR: Long Terminal Repeat; SINE: Short Interspaced Elements; LINE: Long Interspaced Nuclear Element

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BMC Genomics

ISSN: 1471-2164

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