Table 2 Alignment statistics per sample. Median depth and percentage of the genome with specific depths at various points is shown for each sample using the final quality controlled reads. MP01bCHUAC and MP03bCHUAC followed a non-enrichment method, the rest of samples followed the enrichment method. Sequencing run of each sample is also shown
From: A new and efficient enrichment method for metagenomic sequencing of Monkeypox virus
Sample | Run | Enriched | Median depth | Depth 50x (%) | Depth 100x (%) | Depth 1000x (%) |
|---|---|---|---|---|---|---|
MP01bCHUAC | A | No | 102 | 99.77 | 56.85 | 0 |
MP03bCHUAC | A | No | 83 | 95.43 | 39.30 | 2.43 |
MP01CHUAC | B | Yes | 1,869 | 100 | 100 | 99.87 |
MP03CHUAC | B | Yes | 1,576 | 100 | 100 | 99.78 |
MP05CHUAC | C | Yes | 329 | 99.99 | 99.94 | 0 |
MP07CHUAC | C | Yes | 400 | 100 | 99.95 | 0 |
MP08CHUAC | C | Yes | 516 | 100 | 99.97 | 0 |
MP13CHUAC | C | Yes | 115 | 99.92 | 79.83 | 0 |
MP15CHUAC | C | Yes | 262 | 99.98 | 99.93 | 0 |
MP18CHUAC | C | Yes | 460 | 100 | 99.95 | 0 |
MP19CHUAC | C | Yes | 264 | 99.99 | 99.93 | 0 |
MP22CHUAC | C | Yes | 185 | 99.95 | 99.90 | 0 |