Fig. 4

Regions where only the reads of Col were well mapped and its hypermethylation. a Venn diagrams for describing how many windows could be analyzed in each ecotype. All numbers indicate the number of 50 bp windows. The windows in the dark red colored intersection (CR) were read in 6 samples and regions, and the windows where only were read enough more than one stage in Col but not in Cvi were colored in lime (Col SR); those two groups were compared in other analysis (b–d). b Average methylation according to developmental stage in CR (left side) and all measurable regions considered a window in more than one stage. c The composition ratio of genomic features in both CR and Col SR was compared. The number of each group is written above each bar. Ref, the composition of TAIR10 genome. d Averages of CR and Col SR methylation level of Col according to developmental stages were compared in gene and transposable elements