Contribution of RdDM to the ecotype-specific differential methylation on conserved as well as highly variable regions between Arabidopsis ecotypes

Table 2 The number of windows including SNP per cytosine context in Col SR

Cytosine context	CG	CHG	CHH
Total No. of windows	90,839 (100%)	111,478 (100%)	250,505 (100%)
No. of windows with SNP	23,232 (25.6%)	25,137 (22.5%)	62,685 (25.0%)
No. of windows without SNP	67,607 (74.4%)	86,341 (77.5%)	187,820 (75.0%)

Single Nucleotide Polymorphism (SNP) was decided by comparing Col and Cvi genome sequence. The size of the windows is 50 bp without overlap. The percentage in the bracket is based on the total number of windows for each cytosine context

ISSN: 1471-2164