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Table 3 List of SNP markers identified by genome-environment association with their effects

From: Detection of the local adaptive and genome-wide associated loci in southeast Nigerian taro (Colocasia esculenta (L.) Schott) populations

Environment variables

SNP

Chr

Pos (bp)

P value

Effect

R2

BIO1

S1_101024366

1

12,021

2.5E-05

−0.86

0.16

S1_100830796

1

392,983

2.2E-04

0.71

0.13

S1_100583021

1

899

5.4E-04

0.74

0.11

S2_18902671

2

8305

3.9E-04

0.21

0.12

S1_100583021

1

899

5.4E-04

0.74

0.11

BIO8

S1_101024366

1

12,021

1.0E-04

−0.87

0.17

S1_100830796

1

392,983

6.5E-04

0.69

0.12

S2_18902671

2

8305

7.2E-04

0.20

0.12

BIO9

S1_101024366

1

12,021

1.1E-04

−0.95

0.16

S1_100830796

1

392,983

7.0E-04

0.76

0.12

S2_18902671

2

8305

7.5E-04

0.23

0.12

BIO10

S1_100583021

1

899

3.7E-04

0.76

0.14

S1_101024366

1

12,021

4.0E-04

−0.73

0.14

S1_100830796

1

392,983

4.3E-04

0.68

0.14

S2_100587991

2

50,903

5.3E-04

0.86

0.13

BIO11

S1_101024366

1

12,021

1.0E-04

−0.87

0.17

S1_100830796

1

392,983

6.5E-04

0.69

0.12

S2_18902671

2

8305

7.2E-04

0.20

0.12

BIO12

S1_100991964

1

6698

3.0E-05

− 231.89

0.15

S1_101024366

1

12,021

8.3E-05

−200.50

0.14

S1_100379892

1

388,151

2.4E-04

− 155.49

0.12

S5_18911928

5

816

2.9E-04

−75.08

0.12

S2_100913593

2

167,750

5.0E-04

128.23

0.11

S2_18902671

2

8305

5.0E-04

22.30

0.11

BIO16

S1_100991964

1

6698

2.2E-05

−95.56

0.16

S1_101024366

1

12,021

3.1E-05

− 85.78

0.15

S1_100379892

1

388,151

2.3E-04

64.01

0.12

S5_18911928

5

816

5.4E-04

−29.20

0.11

S2_18902671

2

8305

5.8E-04

10.33

0.11

BIO17

S1_100991964

1

6698

7.3E-05

−15.20

0.14

S5_18911928

5

816

2.3E-04

−5.23

0.12

S1_100379892

1

388,151

3.1E-04

10.60

0.11

S2_100913593

2

167,750

3.4E-04

9.06

0.11

S1_101024366

1

12,021

4.2E-04

−12.43

0.11

BIO18

S1_100991964

1

6698

7.9E-04

−46.45

0.13

BIO19

S1_100991964

1

6698

2.2E-05

−95.56

0.16

S1_101024366

1

12,021

3.1E-05

−85.78

0.15

S1_100379892

1

388,151

2.3E-04

64.01

0.12

S5_18911928

5

816

5.4E-04

−29.20

0.11

S2_18902671

2

8305

5.8E-04

10.33

0.11

  1. BIO1 Annual mean temperature, BIO8 Mean temperature of wettest quarter, BIO9 Mean temperature of driest quarter, BIO10 Mean temperature of warmest quarter, BIO11 Mean temperature of coldest quarter, BIO12 Annual precipitation, BIO16 Precipitation of wettest quarter, BIO17 Precipitation of driest quarter, BIO18 Precipitation of warmest quarter and BIO19 Precipitation of coldest quarter, SNP Single nucleotide polymorphism, Chr Chromosome, Pos Position (bp = base pair), R2 Variance explained by the marker