Table 1 Summary of mapping reads of the RNA-seq
From: Transcriptome analysis of Citrus limon infected with Citrus yellow vein clearing virus
Statistics term | Mock-1 | Mock-2 | Mock-3 | Infected-1 | Infected-2 | Infected-3 |
|---|---|---|---|---|---|---|
Raw reads | 62,815,094 | 53,883,178 | 55,416,112 | 55,539,014 | 57,813,818 | 65,060,414 |
Clean reads | 61,867,500 | 53,294,352 | 54,780,098 | 54,821,468 | 57,163,606 | 64,308,378 |
UnMapped | 16,562,604 | 14,080,622 | 15,226,717 | 14,906,716 | 15,290,728 | 16,990,164 |
Mapped reads | 45,301,896 | 39,213,730 | 39,553,381 | 39,914,752 | 41,872,878 | 47,318,214 |
Mapping rate | 72.68% | 71.83% | 71.87% | 72.34% | 72.88% | 73.21% |
Unique mapping | 42,987,758 | 35,056,240 | 37,981,251 | 38,014,332 | 40,124,646 | 45,314,666 |
Unique mapping rate | 70.91% | 70.13% | 70.16% | 70.53% | 71.17% | 71.44% |