Fig. 3
From: Hi-C analysis of genomic contacts revealed karyotype abnormalities in chicken HD3 cell line
Intrachromosomal structural variations in the HD3 cell line. a-c—View of the Hi-C heatmap of genomic contacts in HD3 (upper right) versus CEF (lower left) with a normal genome. Genome read coverage tracks are shown. a—example of deletion (del) of the 20 kb region in GGA2; b—amplification (ampl) of the ~ 1 Mb terminal region on GGA11; c—copy number variation (CNV) within a region of GGA7p. The arrow points to the position of the breakpoint associated with the translocation of a part of GGA7p to GGA33