Table 1 Interchromosomal translocations identified in HD3 cell line based on the analysis of Hi-C heatmaps
From: Hi-C analysis of genomic contacts revealed karyotype abnormalities in chicken HD3 cell line
Interacting chr1 | start, ± 5000 bp | end, ± 5000 bp | Interacting chr2 | Insertion site and approximate breakpoint position, ± 5000 bp |
|---|---|---|---|---|
1 | 180,580,000 | 194,260,000* | 2 | q:149,470,000 |
4 | 0* | 16,835,000 | 5 | qter:59,820,000 |
4 | 18,835,000* | 51,490,000 | 6 | pter:500,000 |
4 | 0* | 16,835,000 | 7 | pter:0–6,310,000 |
4 | 51,505,000* | 91,280,000 | 17 | qter:10,950,000 |
4 | 188,350,000 | 51,490,000* | 19 | qter:9,965,000 |
5 | 0* | 59,820,000 | 9 | ter** |
6 | 500,000 | 35,460,000 | 19 | ter |
7 | 0 | 6,310,000* | 5 | qter:59,820,000 |
7 | 6,145,000 | 36,905,000 | 27 | ter |
7 | 4,110,000 | 36,905,000 | 33 | ter |
12 | 0 | 19,945,000 | 21 | ter |
12 | 0 | 19,945,000 | 23 | qter:5,785,000 |
13 | 500,000 | 18,400,000 | 28 | ter |
17 | 505,000* | 10,950,000 | 28 | ter |
17 | 505,000 | 10,950,000 | 33 | ter |
18 | 0* | 11,040,000 | 3 | pter:0 |
21 | 0 | 325Â 000* | 5 | pter:5000 |
21 | 0 | 325Â 000 | 9 | pter:515,000 |
21 | 0 | 6,860,000 | 23 | ter |
24 | 0 | 6,270,000 | 3 | p:2,200,000 |
27 | 0 | 5,035,000 | 23 | ter |
28 | 0 | 1,140,000 | 12 | ter |
28 | 0 | 1,140,000 | 21 | ter |
28 | 0 | 1,140,000 | 23 | ter |
28 | 0 | 4,970,000 | 33 | ter |