Table 2 Basic information and splicing analysis of RNA-Seq data
From: Transcriptome analysis of Populus × canadensis ‘Zhongliao1’ in response to low temperature stress
Sample | Total raw reads (Mb) | Total clean reads (Mb) | Total clean bases (Gb) | Clean reads Q20 (%) | Clean reads ratio (%) | Total mapping ratio | Total gene number | Known gene number | Novel gene number |
|---|---|---|---|---|---|---|---|---|---|
CK1 | 52.58 | 44.41 | 6.66 | 98.27 | 84.46 | 69.51 | 23,621 | 23,413 | 208 |
CK3 | 55.77 | 45.27 | 6.79 | 98.50 | 81.18 | 72.19 | 23,411 | 23,194 | 217 |
T201 | 55.2 | 44.8 | 6.72 | 98.47 | 81.16 | 71.73 | 25,503 | 25,276 | 227 |
T203 | 54.17 | 44.66 | 6.7 | 98.51 | 82.44 | 74.5 | 25,247 | 25,025 | 222 |
TN402 | 55.16 | 44.69 | 6.7 | 98.34 | 81.01 | 71.62 | 23,057 | 22,856 | 201 |
TN403 | 54.17 | 44.47 | 6.67 | 98.37 | 82.09 | 69.97 | 23,829 | 23,612 | 217 |