From: Genome-wide identification of Kanamycin B binding RNA in Escherichia coli
Transcript Name | Transcript ID | Type | Location | Product | Fold Change |
---|---|---|---|---|---|
rrfF | b3272 | rRNA | cytosol | 5S ribosomal RNA | 61.87 |
ibsC | b4665 | mRNA | inner membrane | toxic peptide IbsC | 60.49 |
rrfB | b3971 | rRNA | cytosol | 5S ribosomal RNA | 56.83 |
rrfE | b4010 | rRNA | cytosol | 5S ribosomal RNA | 56.12 |
trpT | b3761 | tRNA | cytosol | tRNA-Trp(CCA) | 49.42 |
rrfG | b2588 | rRNA | cytosol | 5S ribosomal RNA | 48.15 |
ryfD | b4609 | ncRNA | no annotation | small regulatory RNA RyfD | 45.91 |
rrfD | b3274 | rRNA | cytosol | 5S ribosomal RNA | 45.71 |
rrfH | b0205 | rRNA | cytosol | 5S ribosomal RNA | 45.14 |
rrfC | b3759 | rRNA | cytosol | 5S ribosomal RNA | 38.82 |
ffs | b0455 | ncRNA | cytosol | signal recognition particle 4.5S RNA | 35.04 |
ibsD | b4664 | mRNA | inner membrane | putative toxic peptide IbsD | 24.27 |
ssrS | b2911 | ncRNA | no annotation | 6S RNA | 21.89 |
rrfA | b3855 | rRNA | no annotation | 5S ribosomal RNA | 18.27 |
glmY | b4441 | ncRNA | no annotation | small regulatory RNA GlmY | 17.82 |
dicF | b1574 | ncRNA | no annotation | Qin prophage; small regulatory RNA DicF | 16.18 |
alaW | b2397 | tRNA | cytosol | tRNA-Ala(GGC) | 15.94 |
sibD | b4447 | ncRNA | no annotation | small RNA SibD | 14.08 |
fliG | b1939 | mRNA | inner membrane, cell projection | flagellar motor switch protein FliG | 12.73 |
ryjA | b4459 | ncRNA | no annotation | small RNA RyjA | 11.73 |
insA2 | b0265 | mRNA | cytosol | IS1 protein InsA | 11.64 |
fnrS | b4699 | ncRNA | no annotation | small regulatory RNA FnrS | 11.32 |
ves | b1742 | mRNA | cytosol | HutD family protein Ves | 11.09 |
valV | b1665 | tRNA | cytosol | tRNA-Val(GAC) | 10.53 |
cydH | b4602 | mRNA | inner membrane | cytochromebd-I ubiquinol oxidase accessory subunit CydH | 10.05 |