Genome-wide identification of Kanamycin B binding RNA in Escherichia coli

BMC Genomics

Table 1 Genes enriched greater than 10 fold in 1μM Kanamycin B pull down assay

Transcript Name	Transcript ID	Type	Location	Product	Fold Change
rrfF	b3272	rRNA	cytosol	5S ribosomal RNA	61.87
ibsC	b4665	mRNA	inner membrane	toxic peptide IbsC	60.49
rrfB	b3971	rRNA	cytosol	5S ribosomal RNA	56.83
rrfE	b4010	rRNA	cytosol	5S ribosomal RNA	56.12
trpT	b3761	tRNA	cytosol	tRNA-Trp(CCA)	49.42
rrfG	b2588	rRNA	cytosol	5S ribosomal RNA	48.15
ryfD	b4609	ncRNA	no annotation	small regulatory RNA RyfD	45.91
rrfD	b3274	rRNA	cytosol	5S ribosomal RNA	45.71
rrfH	b0205	rRNA	cytosol	5S ribosomal RNA	45.14
rrfC	b3759	rRNA	cytosol	5S ribosomal RNA	38.82
ffs	b0455	ncRNA	cytosol	signal recognition particle 4.5S RNA	35.04
ibsD	b4664	mRNA	inner membrane	putative toxic peptide IbsD	24.27
ssrS	b2911	ncRNA	no annotation	6S RNA	21.89
rrfA	b3855	rRNA	no annotation	5S ribosomal RNA	18.27
glmY	b4441	ncRNA	no annotation	small regulatory RNA GlmY	17.82
dicF	b1574	ncRNA	no annotation	Qin prophage; small regulatory RNA DicF	16.18
alaW	b2397	tRNA	cytosol	tRNA-Ala(GGC)	15.94
sibD	b4447	ncRNA	no annotation	small RNA SibD	14.08
fliG	b1939	mRNA	inner membrane, cell projection	flagellar motor switch protein FliG	12.73
ryjA	b4459	ncRNA	no annotation	small RNA RyjA	11.73
insA2	b0265	mRNA	cytosol	IS1 protein InsA	11.64
fnrS	b4699	ncRNA	no annotation	small regulatory RNA FnrS	11.32
ves	b1742	mRNA	cytosol	HutD family protein Ves	11.09
valV	b1665	tRNA	cytosol	tRNA-Val(GAC)	10.53
cydH	b4602	mRNA	inner membrane	cytochromebd-I ubiquinol oxidase accessory subunit CydH	10.05

ISSN: 1471-2164