Table 4 Characteristics of 18 DEGs selected by a RDA-Seq analysis using the Ensembl Plants database. Upregulation, downregulation and mixed expression in HCH cultivar in comparisons Poezja/Euforia, Poezja/Dacanto, Piko/Euforia, and Piko/Dacanto was marked 4UP, 4DOWN and 2D2U, respectively
From: Identification of candidate genes responsible for chasmogamy in wheat
Gene symbol | Protein function | Expression | NCBI accession |
|---|---|---|---|
Biotic or abiotic stress related | |||
TraesCS1A02G186600 | probable glutathione S-transferase GSTU6 | 4UP | XM_044472364.1 |
TraesCS3D02G526600 | disease resistance protein PIK6-NP-like isoform X2 | 4UP | XM_044503895.1 |
TraesCS4A02G279100 | oxalate oxidase GF-2.8-like | 4UP | XM_044509164.1 |
TraesCS5A02G378700 | putative linoleate 9S-lipoxygenase 3 | 2D2U | XM_044526899.1 |
TraesCS5D02G301100 | uncharacterized LOC123125137 (IPR008480 domain), mRNA | 4UP | XM_044545667.1 |
TraesCS5D02G491100 | C2H2 zinc finger protein/ ZAT8-like zinc finger protein | 4DOWN | XM_044544001.1 |
TraesCS7A02G264500 | uncharacterized protein LOC123152047 (IPR011692 domain) | 4UP | AK454492 |
Development | |||
TraesCS3A02G046700 | tetraketide alpha-pyrone reductase 2-like | 2D2U | XM_044480598.1 |
TraesCS3A02G491500 | protein LATERAL ROOT PRIMORDIUM 1-like | 4UP | XM_044487267.1 |
TraesCS3D02G171100 | monocopper oxidase-like protein | 2D2U | XM_020297783.3 |
TraesCS6B02G353200 | putative 12-oxophytodienoate reductase II | 4UP | XM_044558341.1 |
Secondary metabolites | |||
TraesCS2A02G243000 | cytochrome P450 89A2-like | 2D2U | XM_044597196.1 |
TraesCS7B02G204100 | cytochrome P450 89A2-like | 2D2U | XM_044576729.1 |
TraesCSU02G048600 | indole-2-monooxygenase-like (LOC123064714), mRNA | 4UP | XM_044488130.1 |
Unknown | |||
TraesCS1D02G030200 | uncharacterized protein LOC123131461 | 4UP | XR_006464182.1 |
TraesCS2A02G511000 | uncharacterized protein LOC123042398 | 4UP | XM_044598116.1 |
TraesCS2B02G539100 | uncharacterized protein LOC123042398 | 4UP | XM_044464862.1 |
TraesCS2D02G512400 | uncharacterized protein LOC123050360 | 4UP | XM_044473166.1 |